PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G00260.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 956aa MW: 104306 Da PI: 5.7661

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G00260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.7e-09	428	469	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E +ll++a + + + W Ia+++ ++t qc +++++ LPERR04G00260.1 428 SWTDQETLLLLEALEIFQAK-WGDIAEHVA-TKTKAQCMLHFLQ 469 7*****************.*****.********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.76E-5	1	44	IPR009057	Homeodomain-like
PROSITE profile	PS50934	11.376	1	52	IPR007526	SWIRM domain
Gene3D	G3DSA:1.10.10.10	3.2E-4	3	47	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51293	19.489	424	475	IPR017884	SANT domain
SuperFamily	SSF46689	3.59E-10	425	474	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-9	425	473	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-6	427	467	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-8	428	470	IPR001005	SANT/Myb domain
Pfam	PF16495	3.7E-22	847	925	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MKKFHANPQM HLEFKDLSEL PDGEMDARLE VLEFLSHWGL INFHPFPPAG QGLSELVESI 60 TSADTEGKIS VVEKLFQFET MQSYLIPAPN QPDVAAPIYA PSLLSEPTLA EDFITQVESS 120 VEYHCNSCSV DCSRKRYHCR TQYGVKSSVE QRKQQTLRAT QDKCRNGTRR GAKRSTQMEP 180 KPSAAATATP TTYRRRGKPK KRKAKATKPP SPSPQPKRQA RDRHPSSSDG DDTRHSPPNP 240 ATEEDASKLP PVAEEAEAIH VLPTIDGEER SSKKANMELK PLPPSAAPIY CRRRKPKRKA 300 KPSSPSLPPK HQAMERDPSE LPPPQIRPLT HSAHQSPLNP TEDEDAPRLD EGELDPAPCT 360 QEVAKLPSTS EEVEAVLSRG ASVHVIPTFA DFDLCCDCYD EGKLDSGMSQ TDFILMESAD 420 IPGFGSTSWT DQETLLLLEA LEIFQAKWGD IAEHVATKTK AQCMLHFLQM PIMDSFLHDG 480 DANETSHETA EKVSAEQGTS RVTEKTEVGK AEGTKTNNGK AAAKTRLNLT ETGGNLDDHV 540 VANTNTNCSI DIIVDASGKT GESNRSSDTE PTKKETSGEN TSNFVDNVLK NAFEAVGHIP 600 NKEDLGSFTE AGNPVMALAA FLSGLVDHDD ATMLCCSSLK AISDMSPALQ LATMHCFILQ 660 DPPNDLKDLP VSSANTDGGQ QKDKDAISNP NVTDKDENLK EGSALSVEEQ STTSTSSKNT 720 RELSNTKESK NGSSQVDPKS TGANDYENPI CEVVKSASDN IRGHSSTSLH VSLNNRNEPC 780 SISSQEASAG STKDTSEIEH EVTDLSTVQQ HESIRTSLKN GNIQDPNSIK DMVADGLSIQ 840 RLQQAAATAI SAAAVKAKLL AKQEEYEIQQ LAALVIDKQL HKMQAKMAFF TEVENLVLQA 900 RSHTEKTRKK LLMDRNAIIA SRMAAMPPRP PPNQPGMPGS RLPVGYGVNQ QHLRRS

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MKKFHANPQM HLEFKDLSEL PDGEMDARLE VLEFLSHWGL INFHPFPPAG QGLSELVESI  60
TSADTEGKIS VVEKLFQFET MQSYLIPAPN QPDVAAPIYA PSLLSEPTLA EDFITQVESS  120
VEYHCNSCSV DCSRKRYHCR TQYGVKSSVE QRKQQTLRAT QDKCRNGTRR GAKRSTQMEP  180
KPSAAATATP TTYRRRGKPK KRKAKATKPP SPSPQPKRQA RDRHPSSSDG DDTRHSPPNP  240
ATEEDASKLP PVAEEAEAIH VLPTIDGEER SSKKANMELK PLPPSAAPIY CRRRKPKRKA  300
KPSSPSLPPK HQAMERDPSE LPPPQIRPLT HSAHQSPLNP TEDEDAPRLD EGELDPAPCT  360
QEVAKLPSTS EEVEAVLSRG ASVHVIPTFA DFDLCCDCYD EGKLDSGMSQ TDFILMESAD  420
IPGFGSTSWT DQETLLLLEA LEIFQAKWGD IAEHVATKTK AQCMLHFLQM PIMDSFLHDG  480
DANETSHETA EKVSAEQGTS RVTEKTEVGK AEGTKTNNGK AAAKTRLNLT ETGGNLDDHV  540
VANTNTNCSI DIIVDASGKT GESNRSSDTE PTKKETSGEN TSNFVDNVLK NAFEAVGHIP  600
NKEDLGSFTE AGNPVMALAA FLSGLVDHDD ATMLCCSSLK AISDMSPALQ LATMHCFILQ  660
DPPNDLKDLP VSSANTDGGQ QKDKDAISNP NVTDKDENLK EGSALSVEEQ STTSTSSKNT  720
RELSNTKESK NGSSQVDPKS TGANDYENPI CEVVKSASDN IRGHSSTSLH VSLNNRNEPC  780
SISSQEASAG STKDTSEIEH EVTDLSTVQQ HESIRTSLKN GNIQDPNSIK DMVADGLSIQ  840
RLQQAAATAI SAAAVKAKLL AKQEEYEIQQ LAALVIDKQL HKMQAKMAFF TEVENLVLQA  900
RSHTEKTRKK LLMDRNAIIA SRMAAMPPRP PPNQPGMPGS RLPVGYGVNQ QHLRRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	298	RRKPKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G00260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063994	0.0	AK063994.1 Oryza sativa Japonica Group cDNA clone:001-124-E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633471.1	0.0	SWI/SNF complex subunit SWI3D isoform X2
TrEMBL	A0A0D9W1T6	0.0	A0A0D9W1T6_9ORYZ; Uncharacterized protein
STRING	LPERR04G00260.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4542	12	14