PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G01660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 162aa    MW: 18027.1 Da    PI: 8.1616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G01660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-054567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C + F++   L  H+++H
  LPERR04G01660.1 45 YTCGYCRREFRSAQALGGHMNVH 67
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.79E-74372No hitNo description
PROSITE profilePS5015711.514572IPR007087Zinc finger, C2H2
PfamPF139124.2E-64569IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MESRSARDHG QQHHHHQHSR PWSCSFSLPA GFSWPPQRSP SSSSYTCGYC RREFRSAQAL  60
GGHMNVHRRE RARLRQCPNP SSIVHGGRTH PLPNLNFSPP SPPLPQQQEY YCSGDRPAVV  120
YSFFSTTATA MAVTKGLEVD LELEVGGGIE EGLDLELRLG CS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G01660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630134e-47AL663013.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence.
GenBankAP0149604e-47AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-47CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880331.15e-58transcriptional regulator SUPERMAN
TrEMBLA0A0D9W2961e-116A0A0D9W296_9ORYZ; Uncharacterized protein
STRINGLPERR04G01660.11e-117(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.15e-16zinc finger protein 11