PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G04720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26548 Da    PI: 7.9246
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G04720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.1e-26959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     kri+n +nrqvtfskRr g++KKA EL vLCda+v +i+fs tg+ly+++s
  LPERR04G04720.1  9 KRIDNATNRQVTFSKRRGGLMKKARELAVLCDADVGLIVFSCTGRLYDFAS 59
                     79***********************************************86 PP
2K-box77.53.5e-26901761298
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++a+ +q+e++ L+++++nL +++R+llGe+L++ ++++Lq L++q+e sl++iR+kK++ll e+i el +k  ++q en +Lrkk+
  LPERR04G04720.1  90 SEAKFWQREVTTLRQQVQNLHHNNRQLLGEELSNFTVRDLQLLQNQVEMSLTSIRNKKDQLLAEEILELNQKGSAVQTENIELRKKF 176
                      6789*********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
CDDcd002655.05E-41277No hitNo description
SuperFamilySSF554553.27E-30295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.9E-2590176IPR002487Transcription factor, K-box
PROSITE profilePS5129714.23992182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGKIAIKR IDNATNRQVT FSKRRGGLMK KARELAVLCD ADVGLIVFSC TGRLYDFASS  60
SIVPFVSMKS IIERYQEAGE EQCRLLNPVS EAKFWQREVT TLRQQVQNLH HNNRQLLGEE  120
LSNFTVRDLQ LLQNQVEMSL TSIRNKKDQL LAEEILELNQ KGSAVQTENI ELRKKFNIAH  180
QRNIELHKRL NSGESTSGEQ ATRTCKDPGE SSTHRDSCVH IDLELSHKGD EDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19180174MEF2C
5f28_B7e-19180174MEF2C
5f28_C7e-19180174MEF2C
5f28_D7e-19180174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G04720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029270.0AK102927.1 Oryza sativa Japonica Group cDNA clone:J033114E21, full insert sequence.
GenBankAY1776950.0AY177695.2 Oryza sativa (japonica cultivar-group) transcription factor MADS25 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635120.11e-143MADS-box transcription factor 25
SwissprotQ84NC51e-144MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A0D9W3C81e-171A0A0D9W3C8_9ORYZ; Uncharacterized protein
STRINGLPERR04G04720.11e-172(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-77AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]