PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G06730.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 657aa    MW: 73988.1 Da    PI: 8.2755
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G06730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07473513340
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +W +eE e l +a++++++g   +W+ +++ +g+gR+ +++
  LPERR04G06730.1 473 PWGKEEIEMLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 513
                      8***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.49E-2075174IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.7E-2092186IPR001623DnaJ domain
SMARTSM002711.0E-1595170IPR001623DnaJ domain
PfamPF002261.2E-1796175IPR001623DnaJ domain
CDDcd062575.85E-1396167IPR001623DnaJ domain
PROSITE profilePS5007618.04596178IPR001623DnaJ domain
PRINTSPR006252.7E-8101119IPR001623DnaJ domain
PRINTSPR006252.7E-8119134IPR001623DnaJ domain
PRINTSPR006252.7E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.051466521IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-4467513IPR009057Homeodomain-like
SMARTSM007171.6E-5470523IPR001005SANT/Myb domain
SuperFamilySSF466895.79E-7472515IPR009057Homeodomain-like
CDDcd001678.64E-5473513No hitNo description
PfamPF002495.7E-6473513IPR001005SANT/Myb domain
SMARTSM007174.1E-6597649IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-7598646IPR009057Homeodomain-like
CDDcd001671.13E-4600642No hitNo description
PROSITE profilePS500905.993601642IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MDSQTSCLLI TYSPEIIDGA PLYVSSNCLP IKACKYEPAG HSFHAAALKL LGLGEQEDTE  60
ADDRSVSSDD KSQDFSAASD TFSSKGKKKS GSQQQDHYAL LGLGHLRFLA TEDQIRKSYR  120
DMALKHHPDK QASLLLAEAT EEAKQAKKDE IESHFKAIQE AYEVLIDPTK RRIFDSTDEF  180
DDDIPTDCAP QDFYKVFGPA FMRNGRWSVN QTIPSLGDDA TPVEEVEKFY NFWYYCFKSW  240
REFPNEDEYD LEQAESREHK RWMERQNAKL QEKAKKIEYA RVRTLVDNAY KKDPRIQRRK  300
EEEKAEKQRR KEAKYLAKKM QEEEAARAVE EERKRKEEEA KKAAEAALNQ KKLKEKEKKL  360
LRKEKTRLRN LVAPVVAENH FSLSEDDVET ACSSLDMEQL KKLCDSMDNK DTTEKARLLR  420
GALSKEGSSG TSNEGKKFQA NGVDGSTAKS SSSEKKVTQG NTLSNYEKKE ERPWGKEEIE  480
MLRKAIQKYP KGTSRRWEVV SEFIGTGRSV EEILKATKTV LLQKPDSTKA FDSFLEKRKP  540
APSIASPLSV RTEAVCLPSE GDANASSKAP AQPASSKAAD EKASAAPVSN GTPSATDPEA  600
WSEAQVLALV QALKAFPKDA SQRWERVSAA VPGKTVVQCR KKVAEMQKNF RSKKGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-171762972124Zuotin
5dje_B4e-171762972124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332353RKRKEEEAKKAAEAALNQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G06730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550890.0CR855089.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652199.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D9W4150.0A0A0D9W415_9ORYZ; Uncharacterized protein
STRINGLPERR04G06730.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain