PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G06900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 183aa    MW: 19655.6 Da    PI: 6.5137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G06900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-1172160799
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                      +s+v +  ++v+p++ a       + + tl     +grsW +++  ++++    l++GW++F+ +n+L+ gD ++F+l+ g  ++ e++v+v+r
  LPERR04G06900.1  72 KSHVQQPFQVVVPRSLAPFLPAT-TAPATLW---WRGRSWGMRF--TGGRMIQRLEAGWRGFAVDNDLRLGDGCLFELVdGGgERVEFRVQVLR 159
                      55666666666666666333222.2232222...479*******..9999999************************88566788888999888 PP

                      S CS
               B3  99 k 99 
                      +
  LPERR04G06900.1 160 A 160
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-1463159IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-1463160IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-1364159No hitNo description
PROSITE profilePS5086311.74466161IPR003340B3 DNA binding domain
PfamPF023624.7E-969160IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MATDPTATAP PQPPRFSSPE PAAAVHAAEK SISGDIAAVP EEEDPVSPAE KIPRPVVLPL  60
LGKPYFSCIM CKSHVQQPFQ VVVPRSLAPF LPATTAPATL WWRGRSWGMR FTGGRMIQRL  120
EAGWRGFAVD NDLRLGDGCL FELVDGGGER VEFRVQVLRA EIPAGIRGRA GGCTSATPIV  180
IDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G06900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199991e-118AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635251.14e-75B3 domain-containing protein Os04g0386900
SwissprotQ7XLP43e-76Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0D9W4361e-129A0A0D9W436_9ORYZ; Uncharacterized protein
STRINGLPERR04G06900.11e-129(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]