PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G07210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 317aa    MW: 33658.8 Da    PI: 5.0322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G07210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10121165655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  LPERR04G07210.1 121 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKDLQ 165
                      568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15112182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-13112166No hitNo description
PROSITE profilePS5088815.294115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15117182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-12121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8121165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEHHHHHLLQ LSPPHLMMSP GFFDVGAVFA DVVVPSVLDV DAGGGDGDWV EDLMHLGELF  60
GVAGDDGDCN NVAVTDAAVC GGGGESPEQP SCGDGDGDVS PPDHGENNSA TRKRRDRSKT  120
IVSERKRRVR MKEKLYELRA LVPNITKMDK ASIIADAVVY VKDLQAHARK LKDEVAVLEA  180
RPAATQRRRA APQAARRAAA ASEEDRGEGS SGGARTRQVG VAQVGEGRFF VTVECEQAAD  240
GGGMAAALCA AVESLSCFRV ESSTLGCSPD RVVSTLTLKV SEAEEDATAI SECTVKLWVM  300
AALLKEGFRP QPTVEIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112127KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G07210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350406e-97CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634338.11e-109transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0D9W4690.0A0A0D9W469_9ORYZ; Uncharacterized protein
STRINGLPERR04G07210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-40FER-like regulator of iron uptake