PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G07320.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 1022aa    MW: 114185 Da    PI: 6.5161
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G07320.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.6e-55111272117
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LK+g+v++l+cyYah+e+np f
  LPERR04G07320.2  11 HKEaRSRWLKPSEVYYILQNHERFPITPEAPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKIGNVDALSCYYAHGEQNPCF 104
                      67779***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylev 117
                      qrrc+w+Le ++e+ivlv+y+ev
  LPERR04G07320.2 105 QRRCFWMLEPAYEHIVLVQYREV 127
                      *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.0637133IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4613126IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.31E-16458541IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.101.4E-6459549IPR013783Immunoglobulin-like fold
PfamPF018333.4E-8459540IPR002909IPT domain
SuperFamilySSF484039.33E-16491750IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.9E-16654750IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.114656748IPR020683Ankyrin repeat-containing domain
CDDcd002041.80E-13661748No hitNo description
PfamPF127961.4E-6672749IPR020683Ankyrin repeat-containing domain
SMARTSM002487.1E-4689718IPR002110Ankyrin repeat
PROSITE profilePS5008810.259689721IPR002110Ankyrin repeat
SMARTSM002482200728757IPR002110Ankyrin repeat
SMARTSM0001527809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529810839IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.9E-6852915IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.766868897IPR000048IQ motif, EF-hand binding site
SMARTSM0001526869889IPR000048IQ motif, EF-hand binding site
PfamPF006120.025870888IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6890912IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64891919IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5892912IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MSMSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEA PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKIGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPAESHSVL SYPNATYGNQ YLGSTSGVSD GSESRQSHSN  180
LSSVTEVSSY SANKEYNKGT GILQSIPMLS QSTISGAPTL GQCSLEQSIE VCQVDNSNST  240
NKSGLNRALK HIVEQLSLGD DEDDDYIYVN QAQPFDFFTN IEAPDRQRGH TSTNVSGDSQ  300
AKQIRSQEMQ NGLGRGISSS WEDVLQSSSG FPTSSIYQSG PHYPQNSEYQ PPGSLYSRDM  360
QQISAAKRFL LGPEEIDSPS FNFVPREEGN NVTDILSAHD NSLQSSLNPD WKRTAPLTLQ  420
SNSYGSEIPG LLLDHGQFEL LSSGENTRLA SAQKQRFNIR EVSPEWAYCY EITKVIITGD  480
FLCDPSSSCW AVMFGDSEVP AEIIQPGVIR CHTPLHSSGN LTICVTLGNR EICSEVKDFE  540
FRAKSTASSF LHISPSSRSL KSSEELLLLA KFVRMLLSEN GNHVNSNDDP QSGLCPKLKM  600
NDEHWQRLID ELKGGCGNPL NVSDWIMEEL LKSKLQQWLT VKLQGYDGTT CSLSKHEQGI  660
IHLISALGYE WALSSVLSAG VGINFRDTNG WTALHWAAYF GREKMVAALL AAGVSAPAVT  720
DPTAQDPVGK TAAFLASERG HMGLAAYLSE VSLTSYLASL TIEESDTSRG SAAVEAERAV  780
ESISQRNAQL HGGTEDELSL KDSLAAVRNA AQAAARIQNA FRAFSFRKRQ QKTARLKDEY  840
GMTQEDIDEL AAASRSYYQY QLPNGQFYDK AAVSIQKKYK GWKGRRQFLN MRRNAVKIQA  900
HVRGHQVRKK YKTFVSTVSV LEKVILRWRR KGHGLRGFRA EQTAMADAEE EDEDDDDDDF  960
NDDDAVKMFR RQKVDESVKE AMSRVLSMVD SPEARMQYRR MLEEFRQATV SSVNGFNDAL  1020
SL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G07320.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652212.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG21e-168CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0D9W4850.0A0A0D9W485_9ORYZ; Uncharacterized protein
STRINGLPERR04G07320.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-145Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]