PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G08300.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 470aa    MW: 48471.2 Da    PI: 8.385
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G08300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.41.8e-18139229186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 
                      +Wt+  +  L++ ++++ e+l+rg+l++ +We+v++++   ++++ +s +qCk+k++nl+kryk + ++  +    ts+++s++p+f+++e
  LPERR04G08300.1 139 EWTDGAISSLLDSYTDRFEQLNRGNLRGRDWEDVAAAVtdGQGKVGKSVEQCKNKIDNLKKRYKVECQRLASTgggTSGTTSHWPWFRKME 229
                      5*************************************766777888*****************8776655432349*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-20137231No hitNo description
Gene3DG3DSA:3.40.1160.104.4E-45285439IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536338.38E-36286463IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006962.2E-9289439IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MASSCDDDFG LLGDDAPQTA AGAAAEPAPP PPPQTFCFGD SAAAGAGIGA GAGAGAGPLA  60
MVAQEEGGNH SAERGKAAGH GSKRGRDRGE ELSDGGEYCS YINSSGGGGG GGGGSGKKGR  120
GGGSGGAAGS WESRKDREEW TDGAISSLLD SYTDRFEQLN RGNLRGRDWE DVAAAVTDGQ  180
GKVGKSVEQC KNKIDNLKKR YKVECQRLAS TGGGTSGTTS HWPWFRKMEQ IVGNPSSPSS  240
SKALVASDDD KSRQPQQHSS KRYAPSGSGT PTLGGGGSKL APLPSPKWKR VLLKIGGTAL  300
AGAAPQNVDP KVIMLIAREV QVACRHGVEV SIVVGGRNIF CGDTWVSATG TDRASTYPIG  360
MMASVMNAVL LQASLEKIGV ETRVQTALTM QEVAEPYIRR RAIRHLEKGR VVIFAGIGAG  420
IGNPLFTTDT AAALRASEIV IFNMLEPGNI SKAICGDQVG TLVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-412884399156Uridylate kinase
3ek5_B4e-412884399156Uridylate kinase
3ek5_C4e-412884399156Uridylate kinase
3ek5_D4e-412884399156Uridylate kinase
3ek5_E4e-412884399156Uridylate kinase
3ek5_F4e-412884399156Uridylate kinase
3ek6_A4e-412884399156Uridylate kinase
3ek6_B4e-412884399156Uridylate kinase
3ek6_C4e-412884399156Uridylate kinase
3ek6_D4e-412884399156Uridylate kinase
3ek6_E4e-412884399156Uridylate kinase
3ek6_F4e-412884399156Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104114SGGGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G08300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087570.0AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637195.10.0uncharacterized protein LOC4335753
TrEMBLA0A0D9W4J90.0A0A0D9W4J9_9ORYZ; Uncharacterized protein
STRINGLPERR04G08300.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-115Trihelix family protein