PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G09480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 234aa    MW: 24206.7 Da    PI: 6.2681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G09480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2067116255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp    +r +r++lg+f tae+Aa+a++aa+++++g
  LPERR04G09480.1  67 KYRGVRRRP-WGKWAAEIRDP----QRaARVWLGTFATAEDAARAYDAAALRFRG 116
                      8********.**********9....258************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-3266125IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-2367125IPR016177DNA-binding domain
PROSITE profilePS5103225.8767124IPR001471AP2/ERF domain
SMARTSM003804.9E-3667130IPR001471AP2/ERF domain
PfamPF008474.0E-1467116IPR001471AP2/ERF domain
CDDcd000181.52E-1967126No hitNo description
PRINTSPR003671.2E-116879IPR001471AP2/ERF domain
PRINTSPR003671.2E-1190106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALSEPELAA ETEAIVSALT HVVACGGEEN AVAAVSTTAA ATTMTWRANV SGNDDDVAMM  60
TATAARKYRG VRRRPWGKWA AEIRDPQRAA RVWLGTFATA EDAARAYDAA ALRFRGSRAR  120
LNFPEDACRL RRPATAPAPM PSHSPLAAGD VAVADYLDYS RILAGPTTPS CDGFFAGGGG  180
GEVNGRFLRS WSIGTSPSSS GSGGGAAAGA GDLFHGGNNG WEQGTDGGGY NGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2266124463ATERF1
3gcc_A1e-2266124463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G09480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880432.15e-47dehydration-responsive element-binding protein 1C-like
SwissprotP930071e-28EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A0D9W4Z01e-166A0A0D9W4Z0_9ORYZ; Uncharacterized protein
STRINGLPERR04G09480.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-24ethylene response factor 110