PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G09530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 66aa    MW: 7349.38 Da    PI: 9.3547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G09530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.7e-063662430
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH  4 ahnerErrRRdriNsafeeLrellPka 30
                      h   E  RR++++s f+ L  l+P++
  LPERR04G09530.1 36 LHACTEGERRKKMKSVFDHLHALVPNL 62
                     5889999******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-52364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.5113266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-43764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MSFEELKDLV THASEGRNGG SDNKKGKNSV DVAHMLHACT EGERRKKMKS VFDHLHALVP  60
NLSKMT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G09530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9W4Z79e-41A0A0D9W4Z7_9ORYZ; Uncharacterized protein
STRINGLPERR04G09530.12e-41(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-07bHLH family protein