PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G09550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 335aa    MW: 35739.8 Da    PI: 6.6334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G09550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11114157855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er RR+++++ f++L  llP+     s+K +Ka+i+ +A+ YIk L+
  LPERR04G09550.1 114 TERERRKKMKNMFSTLHALLPEI----SGKADKATIVGEAIGYIKTLE 157
                      7*********************6....6*****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.344106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15109168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14111167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-11111161No hitNo description
PfamPF000103.2E-9114157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8114162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSQEGADLPR DIDESIDHVV TATANNPVRS IKIEKSLSCS SSDKPGEPNA GLKAASPMVI  60
GMNTKINEEG KSIAIKREEV EGGGDGADIS SGVGTCRNNR KAKSDMEHAL HIWTERERRK  120
KMKNMFSTLH ALLPEISGKA DKATIVGEAI GYIKTLEDVV QKLEALKMER MLAAQQSAAA  180
NANAGEGSSR SQPPHHASMP VPVDGLISNM CQQQQQQQAV AVAVAAGGGG SLPLGTATPS  240
LKTWSAPSIT MTMAGMDAFI YICLPRQGVS FTTVAFVLEK HQIDVVTFTI SAEPEKTLIS  300
VNARLNEESL QSTKGLTPEA KYKLAVSELM TRLAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G09550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636599.11e-120transcription factor bHLH95
TrEMBLA0A0D9W4Z90.0A0A0D9W4Z9_9ORYZ; Uncharacterized protein
STRINGLPERR04G09550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-31bHLH family protein