PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G09930.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 192aa    MW: 19605.7 Da    PI: 6.788
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G09930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer513.3e-162654533
      ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpseg 33
                     +YkeC++NhAa++Gg+a+DGCgE+mps+ 
  LPERR04G09930.1 26 KYKECMRNHAAAMGGQAFDGCGEYMPSSP 54
                     8*************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.1E-122655IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-122657IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.5072797IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.08E-1853124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2956126IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-2767124IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MMDHLSLVPY DAGSGGAGAG GAGGGKYKEC MRNHAAAMGG QAFDGCGEYM PSSPDSLNGG  60
GSGSFGRKRF RTKFTAEQKE RMREFAEKQG WRINRNDDGA LDRFCLEIGV KRHVLKVWMH  120
NHKNHLASPT SAAAAAAGGV GVMNPSAAGI GLGVGVGVGV GVGGDGDGDD DDTDDSPPRA  180
AVSSPSPSPI SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-24681241874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G09930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653420.27e-71PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ7X7N38e-39ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A0D9W5461e-136A0A0D9W546_9ORYZ; Uncharacterized protein
STRINGLPERR04G09930.11e-137(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-21homeobox protein 33