PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10650.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 197aa    MW: 21393.2 Da    PI: 6.273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-181767155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GVr++k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  LPERR04G10650.1 17 SQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 67
                     78*****998.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-121767IPR001471AP2/ERF domain
CDDcd000181.54E-301775No hitNo description
SuperFamilySSF541712.94E-221776IPR016177DNA-binding domain
PROSITE profilePS5103223.7091875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-311875IPR001471AP2/ERF domain
SMARTSM003806.1E-371881IPR001471AP2/ERF domain
PRINTSPR003676.4E-101930IPR001471AP2/ERF domain
PRINTSPR003676.4E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEIRSSPTMS AAGCGISQYR GVRRRKWGKW VSEIRQPGTK TRIWLGSFES AEMAAVAHDV  60
AALRLRGRDA QLNFPGSVDR LPRPASSRPG DIRAAAAEAA DRVRRDPALA MAMTTTPSPP  120
ASSSRWAGGV AAPPRVEQVG GGSDEEFELD SPRLWAEMAE AMLLDPPIWA DQPTWAVDVS  180
EMEVAHCWAH GSLWDAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161779467ATERF1
3gcc_A1e-161779467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194473.12e-71ethylene-responsive transcription factor ERF021-like
TrEMBLA0A0D9W5E11e-137A0A0D9W5E1_9ORYZ; Uncharacterized protein
STRINGLPERR04G10650.11e-138(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-25ERF family protein