PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10720.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 1209aa    MW: 131757 Da    PI: 6.4917
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10720.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.11.2e-081036127
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkk 27
                     +ppGfrFhPtdeel+ +yLkkk+  +k
  LPERR04G10720.2 10 VPPGFRFHPTDEELLLYYLKKKIGFEK 36
                     69********************97665 PP
2NAM98.87.8e-314211555129
              NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  LPERR04G10720.2  42 QNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 115
                      67*************************************9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.8171137IPR003441NAC domain
SuperFamilySSF1019417.06E-495137IPR003441NAC domain
PfamPF023651.2E-2611114IPR003441NAC domain
PfamPF085836.4E-14374443IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
PfamPF007241.8E-73456769IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
SuperFamilySSF513955.8E-103456792No hitNo description
CDDcd029336.01E-155456773No hitNo description
Gene3DG3DSA:3.20.20.704.6E-119456792IPR013785Aldolase-type TIM barrel
Gene3DG3DSA:3.20.20.701.2E-1258221188IPR013785Aldolase-type TIM barrel
CDDcd029332.21E-1488301169No hitNo description
SuperFamilySSF513954.23E-1068301188No hitNo description
PfamPF007241.4E-768311164IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1209 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKIGSA PQNEWYFFSH KDRKYPTGSR  60
TNRATTAGFW KATGRDKCIR TSYRKIGMRK TLVFYRGRAP HGQKTDWIMH EYRLEDADDA  120
QGGTSEDGWV VCRVFKKKCF FKIGGGGGGG GEGSSGSQGG GGDIFGGHGH HLAVSPPLDH  180
DHHQARAAMA AASHYMHHPH QYHSSFYYSQ MQPSPPPPPP PPHSAYSHHV QVQDLLTNHR  240
PSASAADAAG GGYDFSGGLQ PVAAAGLDVG SSDGLGEGVG RDHATGGDAG GAEQQWQGMD  300
GFSNGGGGAA AVQQQLASAM SSGGQRGGEM DLWGYGSRLL RFRSLPAPSA TAKSSPPSAA  360
SSTGVVHINI SSEMHPPLTL HRHPMCAEII EAFQKCHVDH PVKKFFGECT DLKIKLDKCF  420
RQEKALKRKA NFEESKKFKE QLQAYKREMA ENDKEIVLAP LTRSRSYGNI PQSQAILYYL  480
QRATKGGLLI AEATGVSSDA QGMSLIPHTP GIWTKEQVEA WKPIVDAVHA KDGIFFCQIW  540
HVGRASDLEQ EPISSTNKPV EKNEDNYMDF PIPRRLAVEE IPDVINHFRM AARYAIDAGF  600
DGVEIHGAHG FLLEQFMKDN ANDRTDEYGG SLQNRCRFAL EVVDAVASEV GSDSVGIRLS  660
PYASYLSCYD SDPDALGVYM AQELDKRGIL YCSAVEPEMI MVDGKMRIPH RLHDMRKAFR  720
RTFMVGGGYG REEGNRAVAD GYADMVVYGR LFLANPDLLK RFQLNAPLNK YDRSTFYTDD  780
PVVGYTDYPF LDDCEATNAM GYSYLQLLMG ASQRGEDRKG ASTNNMESIP LLSPYNMGKF  840
NLSHRIVLAP LTRSRSYGNL PQPHAMEYYS QRATKGGLLI AEATGVSSDA QGMSVIPHTP  900
GIWTKEQVEA WKPIVDAVHA KGGIFFCQIW HVGRASDMEE RPISSTDKPI QRTEENYFLN  960
FSTPRSLTAE EIPDVINHFA LAAKNALDAG FDGVEVHAAN GFLLDQFMKD GVNNTRSDDY  1020
GGSLANRCRL ALEVVDAVAA VAGAGRTGVR LSPFSRCLDC ADSDPDSLAA HMARELGARG  1080
VLYLNVVEPE MVAAAGEGDQ RLVIPHRLRG VREAFAGTLM AGGGYDREEG NWAVAGGYAD  1140
LVVYGRLFLA NPDLPARFRI GAALNGYDRA TFYTADPVVG YTDYPFLDGG GEEAAAAAAS  1200
SSGEEEGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vji_A1e-1484341188536912-oxophytodienoate reductase (OPR1)
2q3r_A1e-1484341188536912-oxophytodienoate reductase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10720.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620838.10.0putative 12-oxophytodienoate reductase 12
SwissprotB9FFD20.0OPR12_ORYSJ; Putative 12-oxophytodienoate reductase 12
TrEMBLA0A0D9W5F90.0A0A0D9W5F9_9ORYZ; Uncharacterized protein
STRINGLPERR04G10720.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-62NAC domain containing protein 70
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]