PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10750.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 173aa    MW: 17626.6 Da    PI: 7.6392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000133961123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C +C++ F+++  L  H++ H
  LPERR04G10750.1 39 FSCCYCPRKFRSSQALGGHQNAH 61
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0763966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEFGMVEEVV QAGEEAAAAG GLTLSLSLQP TPPRFQALFS CCYCPRKFRS SQALGGHQNA  60
HKLQRNLARR GREAAASIAA ANTSGGDHQH GRAAGESTAQ PPSRVVTADL DAAAAGMWGG  120
GAGMRAAAHY RHHYLQAGAG GAAAPPPSSY SGGGGGMGNG ELADEMIDLS LRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1575005e-62AC157500.1 Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence.
GenBankAL7316065e-62AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence.
GenBankAP0149605e-62AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126125e-62CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankGQ9999985e-62GQ999998.1 Oryza sativa Japonica Group C2H2 zinc finger malformed spikelet (MLS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635414.12e-42homeobox even-skipped homolog protein 2
TrEMBLA0A0D9W5G41e-120A0A0D9W5G4_9ORYZ; Uncharacterized protein
STRINGLPERR04G10750.11e-121(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-10zinc finger protein 2