PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G11580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 147aa    MW: 16281.5 Da    PI: 8.7552
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G11580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-192660135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  LPERR04G11580.1 26 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 60
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.8882056IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-162081IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-132159No hitNo description
Gene3DG3DSA:3.30.50.101.6E-152460IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-152560No hitNo description
PfamPF003202.2E-172660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEMEMDPAPS PVEKVDSDEN NGSKACADCH TTKTPLWRGG PGGPKSLCNA CGIRYRKRRR  60
AALGLDATEG ASEQQQHKKK KAAKKEADAD QEEEDEVTVE LHTVGFRNKD VAAVLKQRRR  120
MRRRKCLGEE ERAAILLMAL SSGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15559RKRRR
2116122QRRRMRR
3117124RRRMRRRK
4118123RRMRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G11580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641177.16e-64GATA transcription factor 16
TrEMBLA0A0D9W5R81e-104A0A0D9W5R8_9ORYZ; Uncharacterized protein
STRINGLPERR04G11580.11e-105(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-26GATA transcription factor 16