PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G11770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26613.4 Da    PI: 9.4944
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G11770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.9e-281059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrngi+KKA+EL +LCdaev +iifsstg+lyey+s
  LPERR04G11770.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELGILCDAEVGLIIFSSTGRLYEYAS 59
                     8***********************************************86 PP
2K-box60.28.2e-21901652298
            K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +kL+  + +L r+   l+G dL+ L +keLq Le+qL+ s+  iR+kK++l++++i+el +k   +++en++L +k+
  LPERR04G11770.1  90 SKLETTTAQLARK-SPLMGLDLSGLGVKELQTLENQLKMSIHCIRTKKDQLMIDEIHELNRKGSLIHQENMELYRKV 165
                      7999999999998.9***********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.721161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-39160IPR002100Transcription factor, MADS-box
CDDcd002656.48E-45277No hitNo description
SuperFamilySSF554553.92E-32283IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.71975171IPR002487Transcription factor, K-box
PfamPF014862.7E-18102165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELGILCD AEVGLIIFSS TGRLYEYAST  60
SMKSVIDRYG RAKEEQQLVA NPNSELKGGS KLETTTAQLA RKSPLMGLDL SGLGVKELQT  120
LENQLKMSIH CIRTKKDQLM IDEIHELNRK GSLIHQENME LYRKVNLIRQ ENAELYKKFY  180
ETGAETEVNR DSTTPYNFAV VEDANAPVRL ELNPPHQQND TEQTAPPKLG LQLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20183183MEF2C
5f28_B1e-20183183MEF2C
5f28_C1e-20183183MEF2C
5f28_D1e-20183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G11770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2436691e-162AK243669.1 Oryza sativa Japonica Group cDNA, clone: J100089N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652364.11e-145PREDICTED: MADS-box transcription factor 27-like
SwissprotQ6EP491e-122MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D9W5U11e-174A0A0D9W5U1_9ORYZ; Uncharacterized protein
STRINGLPERR04G11770.21e-174(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-76AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]