PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G12000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 656aa    MW: 70975.3 Da    PI: 8.3706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G12000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002427444320
                      ETTTTEEESSHHHHHHHH CS
          zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                      C  Cg++F+ +++L rH 
  LPERR04G12000.1 427 CRVCGRRFRARDTLLRHF 444
                      *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1028482.75E-27120212IPR012989SEP domain
SMARTSM005531.1E-41125218IPR012989SEP domain
PROSITE profilePS5139932.19128192IPR012989SEP domain
PfamPF080592.1E-25133206IPR012989SEP domain
Gene3DG3DSA:3.10.20.904.1E-31196305No hitNo description
SuperFamilySSF542366.98E-23201305IPR029071Ubiquitin-related domain
SMARTSM001660.0014238309IPR001012UBX domain
PROSITE profilePS5003317.248239305IPR001012UBX domain
PfamPF007898.2E-15243305IPR001012UBX domain
PROSITE profilePS5015711.177425453IPR007087Zinc finger, C2H2
PROSITE patternPS000280427448IPR007087Zinc finger, C2H2
CDDcd061670.00188454570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
GO:0051117Molecular FunctionATPase binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MSSSNGNGDK KPASGGRGGP TIRTLADISR GTSGFPGGGG GGGGGGGGSD SDEPQEYYTG  60
GEKSGMLVQD PTRRNTVDSI FEQARQMGAL QDQPPPFEDQ SSSSRSFTGT GRLLSGETTP  120
AAPPPPENVL HNIQFWNNGF TVDDGPLRDY YDPANAEFIE SIRLSQCPRE LEPADKRTPV  180
HVNVIKRQED YQAPVKPPSP FQGVGRTLGA GSSAEENSAP APAPATQEPR RSVGIVVDDS  240
LPRTSIQLRL ADGTRMVARF NMHHTVGDIR SFIDASRPGA SRPYQLQTGF PPKQLADPAQ  300
TVEEAVQVRY GGKETRSLAS TSMFTPPFSH LRRRPLAAIP NLLFLRPSHP LSTSTSPATT  360
RAPTTPVAVL WDLAASRPPS TLPLYDAAVR LNLAATSFGR VRLSAAFVHP GHRLPAPSPS  420
AATVHLCRVC GRRFRARDTL LRHFDAIHAR EHAKRLARID SSRGDRRVRL AAALSLKLSK  480
YEKAARELVA ASAADPCSPT DDLRRARVAV EISRNPSDSL LERAHHVLDE GSTGCLMLVS  540
GRDEVAPLLR LAREKGVRSV VVGGESGPAR WADVGFSWAE VIAGKARKAA PSVSGKWRDR  600
DVLKRLEWRY EGDDEDEQVV FEEDGDEDGI DELARKIDGK PWWKLESDGE DSSICR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6opc_Z3e-2444305135411UBX domain-containing protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13248SGFPGGGGGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G12000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066530.0AL606653.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence.
GenBankAL6630170.0AL663017.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636930.10.0uncharacterized protein LOC4336084
TrEMBLA0A0D9W5X30.0A0A0D9W5X3_9ORYZ; Uncharacterized protein
STRINGLPERR04G12000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP291822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-36C2H2 family protein