PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G12670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 214aa    MW: 24020.4 Da    PI: 4.5874
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G12670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.12.3e-1271451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                      lp G+rF+Ptd +++ +yL + + + +   ++  +v++ vd++ + P  +p      +  +  + yfF  +     t++r + +   g W   g
  LPERR04G12670.1   7 LPSGYRFNPTDRQIIGCYLIPMALHGEdslTQKGDVVEGVDVFATRPDAIPFdprhVLGRSVVRAYFFGDHP----TDSRGREVPGGGAWLPCG 96 
                      699******************988888565444568**************954543333344478***9874....5668888999****9876 PP

              NAM  88 k..dkevlsk..kgelvglkktLvfy..kgrapkge..ktdWvmheyrl 128
                          ++ +s   ++e+v  +    f   ++++  g+    +W m+e+rl
  LPERR04G12670.1  97 GggGEKAYSGgdGDETVAYRLKYEFRtaEEEETGGRrrGPRWRMKEFRL 145
                      53345555554555566666666666432333333321468******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-163150IPR003441NAC domain
PROSITE profilePS5100518.7147175IPR003441NAC domain
PfamPF023652.6E-98145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAHRANLPSG YRFNPTDRQI IGCYLIPMAL HGEDSLTQKG DVVEGVDVFA TRPDAIPFDP  60
RHVLGRSVVR AYFFGDHPTD SRGREVPGGG AWLPCGGGGG EKAYSGGDGD ETVAYRLKYE  120
FRTAEEEETG GRRRGPRWRM KEFRLNKGAA AFRRAHARPN PKANLDCVVR VVYTKVDEDE  180
LEEEDDDYEP MDYEFEFEDF DDDQIVAEAA AEAH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G12670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.13e-83NAC domain-containing protein 67-like
TrEMBLA0A0D9W6751e-155A0A0D9W675_9ORYZ; Uncharacterized protein
STRINGLPERR04G12670.11e-156(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231