PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G12910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 373aa    MW: 41671 Da    PI: 5.9499
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G12910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-105798346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +WT  E +ll+++v ++G + W++Ia+++  ++   +c+ r+ +
  LPERR04G12910.1 57 AWTDAETLLLLEGVLKHGDD-WDLIAQHVR-TKNKSECIARLIQ 98
                     8*****************88.*********.999999*999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.82E-105095IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-75095IPR009057Homeodomain-like
PROSITE profilePS5129319.83653104IPR017884SANT domain
SMARTSM007173.3E-854102IPR001005SANT/Myb domain
PfamPF002497.1E-105798IPR001005SANT/Myb domain
CDDcd001671.33E-75795No hitNo description
PfamPF164951.0E-19275346IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGPICGLCSE ECSNGSVQTL KDGLKVCSKC SANDDNKGEA KHPDDKKEQN DNRSSSAWTD  60
AETLLLLEGV LKHGDDWDLI AQHVRTKNKS ECIARLIQLP FGEHILGTVN SKLDNRLHKV  120
QTTDGKVNKS IVTESSSQPI ETVDNMHIDG KEDDADKSNE EHPTKHRRLF SSIDSTVSLM  180
EQLAVLTTST SPDVVAAAAD AAIKALSNEN PHARKAFQLT EKEYQNRSFS SNHVRQRYCS  240
DAINGGQDVE MHRQPDKMQE KMFISTAYQV RAAVATALGV AAGRAKMLAD QEEREMELLM  300
ASIIETQLKK IQYKIKHFEE LELIMDQEYA SVQQIKASLV DEWLKVLQRG FQSGVPIPRD  360
EVLIKLFQNK PNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G12910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1024530.0AK102453.1 Oryza sativa Japonica Group cDNA clone:J033093P09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636725.10.0SWI/SNF complex subunit SWI3A
TrEMBLA0A0D9W6A00.0A0A0D9W6A0_9ORYZ; Uncharacterized protein
STRINGLPERR04G12910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP289434