PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G13560.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 352aa    MW: 37995.2 Da    PI: 9.2065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G13560.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12284329655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Ave+Ik Lq
  LPERR04G13560.4 284 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVEHIKGLQ 329
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.113278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15281344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.96E-12282333No hitNo description
Gene3DG3DSA:4.10.280.107.0E-14283343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9284329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-13284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNPGPSRPQR QGVGEMPSRY GGGASEQGGG GAGRAFFADA PPVVERGATA RTFFPVPGGG  60
GEQQQQQPAA AERAMRHYGG GGGSAEISLG HGHGHGQHHF HQFGVEAKDG QSLMARHNSS  120
PPGFFSSPVM DNGFSSSTRG GLGEVRHATM SSNNKKMKSP LNFGRQGSLS HISEDGIPDL  180
IDNVHGAQGR HEENISTDHV VRSFSGGFSI GSWEDSNSNI VFSTSTGKSG VHNEDDIIVT  240
LSNYESQLVA PREMAGVEKY LQMQHDQVPF RVRAKRGCAT HPRSIAERER RTRISEKLRK  300
LQALVPNMDK QTSTSDMLDL AVEHIKGLQN QLKTLKEDKE KCTCSCKQAS RK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G13560.4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680391e-157AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653553.10.0PREDICTED: transcription factor bHLH128-like, partial
TrEMBLA0A0D9W6I90.0A0A0D9W6I9_9ORYZ; Uncharacterized protein
STRINGOS04T0489600-021e-174(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-48bHLH family protein