PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G13900.3

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Nin-like

Protein Properties

Length: 921aa MW: 100877 Da PI: 6.2376

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G13900.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	26.3	1.4e-08	571	600	1	30
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclT 30 aek+isl++l+kyFs+++kdAAk+Lgv + LPERR04G13900.3 571 AEKNISLDVLRKYFSGSLKDAAKSLGVNRS 600 589************************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	2.16E-5	208	303	IPR029016	GAF domain-like
Pfam	PF02042	2.6E-6	574	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.1E-22	815	896	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-21	816	896	No hit	No description
PROSITE profile	PS51745	23.791	819	899	IPR000270	PB1 domain
SMART	SM00666	1.2E-17	819	901	IPR000270	PB1 domain
Pfam	PF00564	3.8E-16	820	896	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence Send to blast
MDMPTPSNRA GCNGNISSCE EHSDDPYGTA AMNFDSYPEI CSPSVADQLF SLLNDPAAHR 60 MFAMWSSSMG SSPRAAGMSE DIQLETYSGL GEAVEEPSQI MSVNPTEAER TSKSSSELGS 120 DNGAHQGSSI VPRSLVSNSL ADRMLMALSL FRESLGNDAL AQVWMPIEQE GHVLLSTCEQ 180 PFLLDQVLAG YREASRHFVF SAKEEPGLHP GLPGRVFISG VPEWTSSVRY YNRPEYLRME 240 HALHHDIRGS LAMPIYDPSK DSCCAVLELV TKKEKPDFSA EMDSVCNALQ ASTNLLLLYH 300 EAVNLKAKKD SSNQKFYTDN QKLAFTEILD VLRAICHAHM LPLALTWVPT SNGSDGGYIV 360 GKDSAKNSQS GKAILQIHES ACYVNDTNMQ CFFQACAKRH LEKGQGIAGR ALKSNLPFFS 420 PNVKEYSIED YPLAHHARKF GLHAAVAIRL RSTYTGNDDY ILEFFLPVNC RGSGEQQMLL 480 NKLSSTMQRI CKSLRTVYEG EVDKVSACTA AMFSKTNESC LPTGRTESSS HDDQPITEAS 540 LVNEPEVMEP ELAEQVQSSS TRHADKKRST AEKNISLDVL RKYFSGSLKD AAKSLGVNRS 600 LKKIQTVINS VHGVDRSLQY DPATGSLVPV VSLPEKLTFP CDALPTPSVE KAMEEKSGPK 660 SEQGYSSADG SLKQSCQLHI SDVKKSKGDE FHVQTSNYIG SGDSASYGAN VMTKSNSEGA 720 QGPLCPAGAF SALHIKGTDC TNLSASLRPS SDTTRYQIVG RNSPSTQQAD IDMLGGHEKG 780 DHIYPSTSGM TDSSSGSASS QPTFKQNIRR DLKDKTSPAL TVKATYNGDT VRFKFLPSMG 840 WYHLLEEIAK RFKLSTGAFQ IKYKDDEDEW VILANDSDLQ ECVDVLDSIG SHNVKLQEAA 900 LVCSWKRIAR DRGKRFWALV T

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence Send to blast

MDMPTPSNRA GCNGNISSCE EHSDDPYGTA AMNFDSYPEI CSPSVADQLF SLLNDPAAHR  60
MFAMWSSSMG SSPRAAGMSE DIQLETYSGL GEAVEEPSQI MSVNPTEAER TSKSSSELGS  120
DNGAHQGSSI VPRSLVSNSL ADRMLMALSL FRESLGNDAL AQVWMPIEQE GHVLLSTCEQ  180
PFLLDQVLAG YREASRHFVF SAKEEPGLHP GLPGRVFISG VPEWTSSVRY YNRPEYLRME  240
HALHHDIRGS LAMPIYDPSK DSCCAVLELV TKKEKPDFSA EMDSVCNALQ ASTNLLLLYH  300
EAVNLKAKKD SSNQKFYTDN QKLAFTEILD VLRAICHAHM LPLALTWVPT SNGSDGGYIV  360
GKDSAKNSQS GKAILQIHES ACYVNDTNMQ CFFQACAKRH LEKGQGIAGR ALKSNLPFFS  420
PNVKEYSIED YPLAHHARKF GLHAAVAIRL RSTYTGNDDY ILEFFLPVNC RGSGEQQMLL  480
NKLSSTMQRI CKSLRTVYEG EVDKVSACTA AMFSKTNESC LPTGRTESSS HDDQPITEAS  540
LVNEPEVMEP ELAEQVQSSS TRHADKKRST AEKNISLDVL RKYFSGSLKD AAKSLGVNRS  600
LKKIQTVINS VHGVDRSLQY DPATGSLVPV VSLPEKLTFP CDALPTPSVE KAMEEKSGPK  660
SEQGYSSADG SLKQSCQLHI SDVKKSKGDE FHVQTSNYIG SGDSASYGAN VMTKSNSEGA  720
QGPLCPAGAF SALHIKGTDC TNLSASLRPS SDTTRYQIVG RNSPSTQQAD IDMLGGHEKG  780
DHIYPSTSGM TDSSSGSASS QPTFKQNIRR DLKDKTSPAL TVKATYNGDT VRFKFLPSMG  840
WYHLLEEIAK RFKLSTGAFQ IKYKDDEDEW VILANDSDLQ ECVDVLDSIG SHNVKLQEAA  900
LVCSWKRIAR DRGKRFWALV T

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G13900.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060753	0.0	AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636521.1	0.0	protein NLP2
Refseq	XP_015636522.1	0.0	protein NLP2
Refseq	XP_015636523.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0D9W6P2	0.0	A0A0D9W6P2_9ORYZ; Uncharacterized protein
STRING	LPERR04G13900.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-155	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]