PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G13900.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 582aa    MW: 63607.5 Da    PI: 7.6851
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G13900.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK27.18.3e-09232261130
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclT 30 
                      aek+isl++l+kyFs+++kdAAk+Lgv  +
  LPERR04G13900.4 232 AEKNISLDVLRKYFSGSLKDAAKSLGVNRS 261
                      589************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020421.5E-6235267IPR003035RWP-RK domain
SuperFamilySSF542776.45E-23476557No hitNo description
Gene3DG3DSA:3.10.20.2405.6E-22477557No hitNo description
PROSITE profilePS5174523.791480560IPR000270PB1 domain
SMARTSM006661.2E-17480562IPR000270PB1 domain
PfamPF005642.1E-16481557IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MLPLALTWVP TSNGSDGGYI VGKDSAKNSQ SGKAILQIHE SACYVNDTNM QCFFQACAKR  60
HLEKGQGIAG RALKSNLPFF SPNVKEYSIE DYPLAHHARK FGLHAAVAIR LRSTYTGNDD  120
YILEFFLPVN CRGSGEQQML LNKLSSTMQR ICKSLRTVYE GEVDKVSACT AAMFSKTNES  180
CLPTGRTESS SHDDQPITEA SLVNEPEVME PELAEQVQSS STRHADKKRS TAEKNISLDV  240
LRKYFSGSLK DAAKSLGVNR SLKKIQTVIN SVHGVDRSLQ YDPATGSLVP VVSLPEKLTF  300
PCDALPTPSV EKAMEEKSGP KSEQGYSSAD GSLKQSCQLH ISDVKKSKGD EFHVQTSNYI  360
GSGDSASYGA NVMTKSNSEG AQGPLCPAGA FSALHIKGTD CTNLSASLRP SSDTTRYQIV  420
GRNSPSTQQA DIDMLGGHEK GDHIYPSTSG MTDSSSGSAS SQPTFKQNIR RDLKDKTSPA  480
LTVKATYNGD TVRFKFLPSM GWYHLLEEIA KRFKLSTGAF QIKYKDDEDE WVILANDSDL  540
QECVDVLDSI GSHNVKLQEA ALVCSWKRIA RDRGKRFWAL VT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G13900.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607530.0AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636521.10.0protein NLP2
RefseqXP_015636522.10.0protein NLP2
RefseqXP_015636523.10.0protein NLP2
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A0D9W6P30.0A0A0D9W6P3_9ORYZ; Uncharacterized protein
STRINGLPERR04G13900.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.25e-74Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]