PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G15170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 260aa    MW: 28969.3 Da    PI: 7.1949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G15170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.4e-101037128
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkl 28
                     lppGfrF P+deelv++yL kkv+++++
  LPERR04G15170.1 10 LPPGFRFYPSDEELVCHYLYKKVTNEHV 37
                     79*********************99874 PP
2NAM99.45.2e-314111654128
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s  ++++vg++ktLvfy+grap+g k+ Wvmhe+rl
  LPERR04G15170.1  41 TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPsTRAHVGMRKTLVFYQGRAPNGLKSGWVMHEFRL 116
                      4579************************************9967778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.9791135IPR003441NAC domain
SuperFamilySSF1019415.1E-508135IPR003441NAC domain
PfamPF023651.6E-2711116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGLREIESTL PPGFRFYPSD EELVCHYLYK KVTNEHVAKL TASEWYFFSF RDRKYATGSR  60
TNRATKTGYW KATGKDREVR SPSTRAHVGM RKTLVFYQGR APNGLKSGWV MHEFRLDSPH  120
SPPKEDWVLC RVFQKSKGDG EQDNNGATSA ASPVTFAASS RAAVPDQAQA AYSDQTGSSM  180
GFAPRQNEIL DSSNHDHQLL NLAMFQCNSV LDQLPQEVNS SAMMGLGSIG IGDEYGFFYD  240
TGFEETASLG AAMRFPQGWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-3911354165NO APICAL MERISTEM PROTEIN
1ut4_B4e-3911354165NO APICAL MERISTEM PROTEIN
1ut7_A4e-3911354165NO APICAL MERISTEM PROTEIN
1ut7_B4e-3911354165NO APICAL MERISTEM PROTEIN
3swm_A4e-3911357168NAC domain-containing protein 19
3swm_B4e-3911357168NAC domain-containing protein 19
3swm_C4e-3911357168NAC domain-containing protein 19
3swm_D4e-3911357168NAC domain-containing protein 19
3swp_A4e-3911357168NAC domain-containing protein 19
3swp_B4e-3911357168NAC domain-containing protein 19
3swp_C4e-3911357168NAC domain-containing protein 19
3swp_D4e-3911357168NAC domain-containing protein 19
4dul_A4e-3911354165NAC domain-containing protein 19
4dul_B4e-3911354165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G15170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0629550.0AK062955.1 Oryza sativa Japonica Group cDNA clone:001-109-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652516.11e-164PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
SwissprotQ84TE62e-50NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D9W7610.0A0A0D9W761_9ORYZ; Uncharacterized protein
STRINGLPERR04G15170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-68NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]