PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G15600.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

TCP

Protein Properties

Length: 204aa MW: 21637.6 Da PI: 9.8202

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G15600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.6	1.9e-33	56	146	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg........k 89 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++ +a +c +a ss+ + + + g LPERR04G15600.1 56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTAPAvFSCsSAPSSVLGKRHRQDGdgfdepppP 146 89*******************************************************9988855555555555555544444445555551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.009	55	109	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.6E-29	55	131	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MASRDLATFQ VYRPMAMPTP SAPLPSQQIT MPFAAAPPAD AAVLPAPPRK ACGGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTAPAVFS 120 CSSAPSSVLG KRHRQDGDGF DEPPPPSLSF WEALHQPPRP VLSAWGISQE AQAYASSVAH 180 VQHLNLLSAL SGGSAATRRI AEEE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G15600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064708	1e-115	AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBank	AL663019	1e-115	AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBank	AP014960	1e-115	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-115	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855230	1e-115	CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635777.1	7e-87	transcription factor TCP21
Swissprot	Q9FMX2	9e-37	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D9W7D0	1e-145	A0A0D9W7D0_9ORYZ; Uncharacterized protein
STRING	LPERR04G15600.1	1e-146	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	5e-38	TCP family protein