PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G15780.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 448aa    MW: 48111.4 Da    PI: 9.0742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G15780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19203253256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  LPERR04G15780.1 203 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 253
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.97E-32202261No hitNo description
SuperFamilySSF541713.99E-23203262IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-32203261IPR001471AP2/ERF domain
PROSITE profilePS5103222.998203260IPR001471AP2/ERF domain
SMARTSM003802.5E-38203266IPR001471AP2/ERF domain
PfamPF008472.6E-12204253IPR001471AP2/ERF domain
PRINTSPR003677.9E-11204215IPR001471AP2/ERF domain
PRINTSPR003677.9E-11226242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDAPSGESSG GGRRWKGKGV TPIQPRRLLG TVMEDASAAL LRPLKKIGRS PDRLLRSASS  60
LSTSSSAPPS PRSSSASDVV APAGVVSSSS PSPPSARRIF PFAYEASTLQ HPLQWQHTSM  120
SQPASPSQQQ PLQHQQMISF GGASSPPQQQ QFVVPENAQQ QQVLLRYWSE ALNLSPRGGG  180
AGVPPWLYQQ LLRAGPPPPP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEDAA  240
MAYDREAFKL RGENARLNFP DRFLGKGRAG GSGRTSVTSS SSAAAAAASC SSSSPSPPET  300
PDEANTQQHA PQPREQRDTA KMSMEKQPQA PTVDDTAAPY SAEMLHAPPV ASGGMWAPPD  360
ESWFSTWGPG SSFWDDYDMD SARGLYLHPR FVSGDETSMD HSGTQASVPA TAATAAGRCI  420
SCDDVPVTSS SDLPPQGASQ NPAFMWKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20202262465ATERF1
3gcc_A4e-20202262465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G15780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691525.11e-171PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0D9W7F20.0A0A0D9W7F2_9ORYZ; Uncharacterized protein
STRINGLPERR04G15780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-36ERF family protein