PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G16840.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 241aa    MW: 26615.2 Da    PI: 8.7126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G16840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1979133256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  LPERR04G16840.1  79 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 133
                      788899***********************************************98 PP
2HD-ZIP_I/II129.11.9e-4179168191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  LPERR04G16840.1  79 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 168
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1865129IPR009057Homeodomain-like
SuperFamilySSF466896.68E-1970136IPR009057Homeodomain-like
PROSITE profilePS5007117.34675135IPR001356Homeobox domain
SMARTSM003898.3E-1877139IPR001356Homeobox domain
CDDcd000868.91E-1679136No hitNo description
PfamPF000468.5E-1779133IPR001356Homeobox domain
PRINTSPR000314.8E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000314.8E-6115131IPR000047Helix-turn-helix motif
PfamPF021832.2E-11135169IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-24135179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MMERAEDLRL SLSLSSPLAP RTHHVAMLFH APPEKRFLEM PLLPAAKRSE VVVAADEGMR  60
GGGGGSDEEE GGCGIDGSRK KLRLSKDQSA VLEDSFREHP TLNPRQKATL AQQLGLRPRQ  120
VEVWFQNRRA RTKLKQTEVD CEFLKRCCET LTEENRRLQK EVQELRALKL VSPHLYMNMS  180
PPTTLTMCPS CERVSNTNNS NSNSSSSAAA AAADRRGVGS DTAAEGGILC HRPIAVRPQQ  240
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783SRKKLRL
2127135RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G16840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220060.0AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652606.11e-131PREDICTED: homeobox-leucine zipper protein HOX17
SwissprotQ01I231e-127HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLA0A0D9W7V31e-177A0A0D9W7V3_9ORYZ; Uncharacterized protein
STRINGLPERR04G16840.11e-177(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-66homeobox protein 2