PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G16900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 230aa    MW: 24467.9 Da    PI: 6.2414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G16900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1857106255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  LPERR04G16900.1  57 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 106
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1957115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-3157115IPR001471AP2/ERF domain
SMARTSM003802.8E-3457121IPR001471AP2/ERF domain
PfamPF008471.6E-1257106IPR001471AP2/ERF domain
PROSITE profilePS5103222.99857115IPR001471AP2/ERF domain
CDDcd000181.38E-2858115No hitNo description
PRINTSPR003671.0E-105869IPR001471AP2/ERF domain
PRINTSPR003671.0E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDNTHEPSSP ASHDTTTSSS TSSSSSSSST SSSSCAAVAK KKRARNGNGN DEGRHPTYRG  60
VRMRSWGKWV SEIREPRKKS RIWLGTFATA EMAARAHDVA ALAIKGARAA HLNFPGLAHL  120
LPRPASSAPK DVQAAALLAA AADFPFPSPS DDGNGSANAK SPDADASPSQ QQQQQQPSAP  180
VDPDSELFDL PDLLLDLRYE SSSSLSCGAS WAVDDGVFRL EEPMPMLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16551151272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G16900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084731e-108AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630001e-108AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149601e-108AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582821e-108AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634439.13e-67ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ73e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D9W7W71e-165A0A0D9W7W7_9ORYZ; Uncharacterized protein
STRINGLPERR04G16900.11e-166(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]