PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 315aa    MW: 32695.2 Da    PI: 7.7659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05526223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+++F ++  L  H+r+H
  LPERR04G17110.1  5 TCKLCSRRFGNPRALAGHMRSH 26
                     6********************9 PP
2zf-C2H211.60.00089175197123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  LPERR04G17110.1 175 FQCPACKKVFRSYQALGGHRASH 197
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598431IPR007087Zinc finger, C2H2
PfamPF138940.001526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139128.4E-11174197IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286175197IPR007087Zinc finger, C2H2
SMARTSM003550.026175197IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.2E-7175197No hitNo description
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-7236261No hitNo description
SMARTSM0035588241261IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-9241262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAKNTCKLCS RRFGNPRALA GHMRSHSVSA AAAAAARSQI SSTSSASTSI AAGDDDGGGD  60
AKTKKPIQGY VLGEKPKRRV RLAESSDFSD RESESEYYSS SSPPHGKRAN TGSGGGDAEQ  120
VSSVSDAGTS EEDFVAMSLI MLSRDTWPSP PPPPLSSYHG DEPPAPAAAQ KRTRFQCPAC  180
KKVFRSYQAL GGHRASHIRG GRGGCCAPPP INHPPPSPAT PLQPLPEFDV GGGEEDGGKP  240
HECPYCFRVF ASGQALGGHK RSQLCSAAAA AAAADDHHPA TGKSNGFIDL NLPAPFDDVE  300
LSAVSDPFLS SKPGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480KPKRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634603.21e-126zinc finger protein ZAT1
TrEMBLA0A0D9W7Z10.0A0A0D9W7Z1_9ORYZ; Uncharacterized protein
STRINGLPERR04G17110.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-26C2H2-like zinc finger protein