PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 491aa    MW: 50553.7 Da    PI: 6.1006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS96.44.4e-303424733137
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a + g+   a+++Larl+++  p+g+p+ R a+y++eAL   la+      +  +++ ts+ +++ +laa+k fs++sP+l+f+++
  LPERR04G17210.1 342 DELAAAAKAAEVGNSIGAREILARLNQQFPPTGKPFLRSASYLKEALLLALAD-----GHHGATRLTSPLDVALKLAAYKSFSDLSPVLQFANF 430
                      6799*************************************************.....6666778888888*********************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpe 137
                      ta qa+l+++ +   +++ +iDfd++ G+QW+++lq+La R +
  LPERR04G17210.1 431 TATQALLDEIGSTtaSCIRVIDFDLGVGGQWASFLQELAHRHG 473
                      **********9887799************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.716314491IPR005202Transcription factor GRAS
PfamPF035141.5E-27342473IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRAAPFCADG NGAALLWPED KGGGIGVGGG GGGLLVEPRS VLDCRGSPSP PNSTSTLSSS  60
HGSGAADSTS TGVAAVSENS AAAAAAEASR WAGPGEHGGG GRREEWGGGD LPPIPGALDS  120
GFVGVESWDA MLGDAAAAGG QDQTFLNWIM DGPGDMEPQA PGLPHQQLLG NVAGFGFPAA  180
DSLGFSLQRH FDLSLTSSSG SNSKVTSTFG LLPPQPALQS PPATAVPFHG GADIKPPLLG  240
LPSSPNLLLN QHQTTAASTF FMPFPTFSDH QNQPLLQPPP KRHHSVPDNL FLLHNQPQPP  300
ARCLPFPTLH GAAPFQLQPS LQSARNAMKT TVAAAQQQQI LDELAAAAKA AEVGNSIGAR  360
EILARLNQQF PPTGKPFLRS ASYLKEALLL ALADGHHGAT RLTSPLDVAL KLAAYKSFSD  420
LSPVLQFANF TATQALLDEI GSTTASCIRV IDFDLGVGGQ WASFLQELAH RHGTGGRPNG  480
FGNLGVSVSM V
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007570.0AK100757.1 Oryza sativa Japonica Group cDNA clone:J023118P13, full insert sequence.
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAL6066470.0AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLA0A0D9W8030.0A0A0D9W803_9ORYZ; Uncharacterized protein
STRINGLPERR04G17210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-25GRAS family protein