PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17390.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 446aa    MW: 49273.9 Da    PI: 4.7081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17390.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12358405355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++ + f  L++l+P+        K+ Ka+iL +++ YIk+L+
  LPERR04G17390.3 358 KNHVMSERRRREKLSEMFLILKSLVPSiH------KMHKASILAETITYIKELE 405
                      5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-4211168IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.523355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-14358409No hitNo description
SuperFamilySSF474594.19E-17358420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17359416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9359405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-14361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAPAGHPPAP PLVLTWNDGF YNGEVKTRKL SNSGDLTANE IILQRSEQLR ELYSSLLSGE  60
CNHRARRPVA ALSPEDLGDT EWYYVICMTY VFRPGQGLPG RSFASNGSVW LYNAQSADSR  120
TFARALLAKN ASIQTIICIP FMSGVLELGT TDLVMEQPNL VDRITASFGE PGFSACLEVP  180
NSSPSPNEVG DADDIVLEDL IDNAIEEEQM IQPGEHELGN AVVVADQHVS NAYDGLEQIT  240
MEIDELYSLC KELDMDTSLS LEHDNSYWPM NIGSFQLVRT FSPVAMDATA AAAVSDVDGV  300
ASITSCFMTW KRANLDEIPV SQTGIESQKL LKKAVDGGTW MNNNGRGSVA MTQKSSIKNH  360
VMSERRRREK LSEMFLILKS LVPSIHKMHK ASILAETITY IKELEKRVKE LEFNSEPSHQ  420
RSTKVPSNMN VIVIDKIVHL DVCLFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-151116844192Transcription factor MYC3
4rqw_B6e-151116844192Transcription factor MYC3
4rru_A1e-141116483227Transcription factor MYC3
4rs9_A6e-151116844192Transcription factor MYC3
4ywc_A1e-141116483227Transcription factor MYC3
4ywc_B1e-141116483227Transcription factor MYC3
4yz6_A6e-151116844192Transcription factor MYC3
5t0f_A8e-151116444188Transcription factor MYC3
5t0q_A8e-151116444188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363368ERRRRE
2364369RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17390.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653663.10.0PREDICTED: anthocyanin regulatory R-S protein-like
RefseqXP_015692285.10.0PREDICTED: anthocyanin regulatory R-S protein-like
SwissprotP135261e-123ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0D9W8290.0A0A0D9W829_9ORYZ; Uncharacterized protein
STRINGLPERR04G17390.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-71bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]