PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G17810.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Nin-like

Protein Properties

Length: 319aa MW: 35990 Da PI: 8.1385

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G17810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.3	1e-25	205	254	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d++++F+lpi++A+++L+v++++LK++CRqy+I+RWPhRkiksl LPERR04G17810.1 205 ASITLVDIAQHFHLPINEASRTLKVGVSILKKKCRQYNIPRWPHRKIKSL 254 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.849	189	274	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-21	206	254	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDAAAAAVST LSSLAVFGDH GAAAAAAVRV RSVHGYRVYG RGGRGRWERW VEREFFLSPE 60 SCREVAVAAP RILPAEWRGR PAFREGQVVG AWRCILAFDS AAAGAPPPSP PPVLCPFRNP 120 RLMCVPSLYN DLEKVFQFQN VEKKIPKLLR CDSEEKLTRW VDAEEKKPDA VVHASESDSD 180 DELQSGEELK PALQKQQRAN KKHIASITLV DIAQHFHLPI NEASRTLKVG VSILKKKCRQ 240 YNIPRWPHRK IKSLDSLIQD LEYVIDDDDD TGDDVQQEKH KQTEEEKQKV ILALTRRKQM 300 LENEKETIQQ TPAMDLKAN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G17810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	7e-72	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	1e-151	protein RKD5 isoform X1
TrEMBL	A0A0D9W894	0.0	A0A0D9W894_9ORYZ; Uncharacterized protein
STRING	LPERR04G17810.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-36	RWP-RK domain-containing protein