PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 553aa    MW: 56608.9 Da    PI: 8.2671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-052648123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k F r  nL+ H r H
  LPERR04G17920.1 26 FVCEVCNKGFQREQNLQLHRRGH 48
                     89*******************88 PP
2zf-C2H212.30.0005103125123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H + +
  LPERR04G17920.1 103 WKCEKCSKRYAVQSDWKAHSKIC 125
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.33E-72548No hitNo description
Gene3DG3DSA:3.30.160.607.6E-62548IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00412648IPR015880Zinc finger, C2H2-like
PfamPF121713.6E-52648IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0942648IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-491124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.33E-798123No hitNo description
SMARTSM00355130103123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MNVSSADPDA EVIALSPKTL LATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPL  60
QAQRRRVYLC PEPTCVHHDP ARALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA  120
HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQESSR LPPPTSLSSL TGHLYGAAAG  180
GANAGNMSLS LSQVGSHLTT SLHDAHHHHH PSPELLRLGG AGAGGGSSIA ARLDHLLSPS  240
AGGASAFRPP QPAFFLNAAA AAAATAGHAD FGDDGAGNGQ HSFLQAKPFH GLMQLPDLQG  300
NGAGGGGAAG GNFFNHLGFF ANNGNSSGSS HEHASQGIMS NDQFSGGGGG GGSDASAAGI  360
FGGNFVGGEH VSAAGLYGDQ AAAMLPQMSA TALLQKAAQM GATSSAANGA AASVFRGFVT  420
SSPHMRPASA AQQHMDQSEA HLNDLMNSLA GGGGGGGGIN AAAAMFAGVN GGPGAGMFDI  480
DQHEVKFSQG GGGVGAGAGD MTRDFLGVGG GGIVMSTPRG GGGGGEHHQS SSDMSSLEAE  540
MKSASSFNGR RMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3499161365Zinc finger protein JACKDAW
5b3h_F4e-3499161365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446943.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_021318855.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0D9W8A80.0A0A0D9W8A8_9ORYZ; Uncharacterized protein
STRINGLPERR04G17920.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-98indeterminate(ID)-domain 12