PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G18060.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HD-ZIP

Protein Properties

Length: 797aa MW: 86324.5 Da PI: 5.9589

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G18060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.5e-20	81	136	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p+ + r+eL+k+l+L+ rqVk+WFqNrR+++k LPERR04G18060.1 81 KKRYHRHTPQQIQELESLFKECPHPDDKLRTELSKRLRLEPRQVKFWFQNRRTQMK 136 678899***********************************************998 PP
2	START	153.1	2.4e-48	290	539	2	206
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla.... 77 la +a++elvk+a+ +ep+W s e +n +e++ +f + + + +ea+r+sg+v+ +++a ve+l+d ++W+ ++ LPERR04G18060.1 290 LAMSAMDELVKMAQMGEPLWIPISseaaslvkETLNFEEYINTFLPCIGvrpegYVTEASRESGIVIiDDSAAIVETLMDEVRRWSDMFScmia 383 67899*************9888899***************9999**********997256779***************** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECT CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksn 159 ka+t+e is+g gal lm+aelq+lsplvp R+ +f+R+++ql +g+w++vdvS d+ + + + +++lpSg+++e+++n LPERR04G18060.1 384 KASTIEEISTGvvgtrnGALLLMQAELQVLSPLVPvRELTFLRFSKQLAEGVWAVVDVSADELMRDQGltsvsTNANMNCRRLPSGCVLEDTPN 477 *******************************************************998765554444667788999********** PP CE...............EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 gh...............skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g kvtwveh++++++++h+l+r+l++sgla ga +w atlqrqce+ LPERR04G18060.1 478 GFckvqkglqpriqdyfRKVTWVEHTEYDEASVHQLYRPLLRSGLALGAGRWIATLQRQCEC 539 **********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-22	58	140	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-20	65	137	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	78	138	IPR001356	Homeobox domain
SMART	SM00389	7.0E-19	79	142	IPR001356	Homeobox domain
CDD	cd00086	7.77E-19	80	139	No hit	No description
Pfam	PF00046	6.9E-18	81	136	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.697	280	542	IPR002913	START domain
SuperFamily	SSF55961	5.22E-22	284	539	No hit	No description
CDD	cd08875	1.65E-101	285	538	No hit	No description
SMART	SM00234	1.0E-34	289	539	IPR002913	START domain
Pfam	PF01852	3.0E-40	290	539	IPR002913	START domain
SuperFamily	SSF55961	5.08E-18	560	763	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence Send to blast
MQFPYSGAAP GVFTSSPALS LALADAAGRD GGGGGKARDA SEAENESRSG SDHHDVISSG 60 GGGGDGNDDD DAEPGNTRKR KKRYHRHTPQ QIQELESLFK ECPHPDDKLR TELSKRLRLE 120 PRQVKFWFQN RRTQMKAQMD RHENALLKQE NDKLRTENLS MREAMRNPVC GGCGGPAMLT 180 DVPFHEHDLR VENARLRDEL GRVCALTAKF LGKPLSAMAP PLQIHHQRHR PVSGSSSLEL 240 AVGGVMPSST ITDFAGAMSG SMGTVITPIK SEAGVPSAMA GIGTSLFMEL AMSAMDELVK 300 MAQMGEPLWI PISSEAASLV KETLNFEEYI NTFLPCIGVR PEGYVTEASR ESGIVIIDDS 360 AAIVETLMDE VRRWSDMFSC MIAKASTIEE ISTGVVGTRN GALLLMQAEL QVLSPLVPVR 420 ELTFLRFSKQ LAEGVWAVVD VSADELMRDQ GLTSVSTNAN MNCRRLPSGC VLEDTPNGFC 480 KVQKGLQPRI QDYFRKVTWV EHTEYDEASV HQLYRPLLRS GLALGAGRWI ATLQRQCECL 540 AILMSSIALP ENDSAATIHP EGKRSMLKLA RRMTENFCAG VSTSSARDWS KMDGLTGNIG 600 EDVHVMARKS VDEPGTPPGV VLSAATSVWM PVMPEQLFNF LRNERLRAEW DILSNGGPMQ 660 EVTSISKGQL DGNSVCLLKA SPTSANQNSM LILQETCTDT SGSMVVYAPV DIPAMHLVMS 720 GGDSTCVALL PSGFAILPAG PSTGPGHKMG GTLLTVAFQI LVNSQPTAKL TVESVETVNN 780 LISCTINKIK TALHCDV

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence Send to blast

MQFPYSGAAP GVFTSSPALS LALADAAGRD GGGGGKARDA SEAENESRSG SDHHDVISSG  60
GGGGDGNDDD DAEPGNTRKR KKRYHRHTPQ QIQELESLFK ECPHPDDKLR TELSKRLRLE  120
PRQVKFWFQN RRTQMKAQMD RHENALLKQE NDKLRTENLS MREAMRNPVC GGCGGPAMLT  180
DVPFHEHDLR VENARLRDEL GRVCALTAKF LGKPLSAMAP PLQIHHQRHR PVSGSSSLEL  240
AVGGVMPSST ITDFAGAMSG SMGTVITPIK SEAGVPSAMA GIGTSLFMEL AMSAMDELVK  300
MAQMGEPLWI PISSEAASLV KETLNFEEYI NTFLPCIGVR PEGYVTEASR ESGIVIIDDS  360
AAIVETLMDE VRRWSDMFSC MIAKASTIEE ISTGVVGTRN GALLLMQAEL QVLSPLVPVR  420
ELTFLRFSKQ LAEGVWAVVD VSADELMRDQ GLTSVSTNAN MNCRRLPSGC VLEDTPNGFC  480
KVQKGLQPRI QDYFRKVTWV EHTEYDEASV HQLYRPLLRS GLALGAGRWI ATLQRQCECL  540
AILMSSIALP ENDSAATIHP EGKRSMLKLA RRMTENFCAG VSTSSARDWS KMDGLTGNIG  600
EDVHVMARKS VDEPGTPPGV VLSAATSVWM PVMPEQLFNF LRNERLRAEW DILSNGGPMQ  660
EVTSISKGQL DGNSVCLLKA SPTSANQNSM LILQETCTDT SGSMVVYAPV DIPAMHLVMS  720
GGDSTCVALL PSGFAILPAG PSTGPGHKMG GTLLTVAFQI LVNSQPTAKL TVESVETVNN  780
LISCTINKIK TALHCDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	81	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G18060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111914	0.0	AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence.
GenBank	AK112099	0.0	AK112099.1 Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652658.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC4
Swissprot	Q7Y0V9	0.0	ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBL	A0A0D9W8C7	0.0	A0A0D9W8C7_9ORYZ; Uncharacterized protein
STRING	LPERR04G18060.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wei J, et al. GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7. Plant Sci., 2016. 252: p. 133-143 [PMID:27717449] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]