PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G18190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 219aa    MW: 23946.8 Da    PI: 5.1349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G18190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1752102155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ykGVr +   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+ +l+g
  LPERR04G18190.1  52 PVYKGVRSRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAAMALRG 102
                      68****9666.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1252102IPR001471AP2/ERF domain
SMARTSM003801.7E-2753116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3053112IPR001471AP2/ERF domain
PROSITE profilePS5103221.27253110IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2053111IPR016177DNA-binding domain
CDDcd000181.33E-2654112No hitNo description
PRINTSPR003675.6E-85465IPR001471AP2/ERF domain
PRINTSPR003675.6E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEWAYYGSGY SSSGTLPLVG GDGDEDSSYM TVSSAPPKRR AGRTKFKETR HPVYKGVRSR  60
NPGRWVCEVR EPHGKQRIWL GTFETAEMAA RAHDVAAMAL RGRAACLNFA DSPRRLRVPP  120
LGSGHEEIRR AAVEAAEMFR PAPGQHNADP DAAAVAAQGA AGSAELFADF PCYPMDGLEF  180
EMQGYLDMAQ GMLIEPPPMA GPSAWAEEDY DCEVNLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13511091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00453DAPTransfer from AT4G25480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G18190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066400.0AL606640.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY1141100.0AY114110.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF-1-like protein mRNA, complete cds.
GenBankAY7858960.0AY785896.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1E (DREB1E) gene, complete cds.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551580.0CR855158.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635170.11e-127dehydration-responsive element-binding protein 1E
SwissprotA2XWL61e-128DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2731e-128DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLA0A0D9W8E31e-160A0A0D9W8E3_9ORYZ; Uncharacterized protein
STRINGLPERR04G18190.11e-161(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-36dehydration response element B1A
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]