PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19640.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 478aa    MW: 53240.8 Da    PI: 5.2104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11278324354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +a+ + Er RR+++N +f +Lr l P++     +K++ a+i+  A+eYI +L
  LPERR04G19640.1 278 KANFATERERREQLNVKFRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 324
                      68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.598275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8278324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.94E-12278342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-8281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-10282337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-8284329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MIWREAAPHC FAKMITGVGY FQDSHDPLMA GSLIHDTNQA PTSSENTSID LQKFKVHSYS  60
TESLSNTTNL AEAARAINHL QHQLEIDLEQ EVPPVETANW DPAICTIPDH IINHQFSEDP  120
QNILVEQQIQ QYDSALYPNS VYTPAPDLLN LMQCTMATAF PAATSVYGDT TLSGTNYLDL  180
NGELTGVAAV PDTGSGLMFA SDSALQLGYH GTQSHLIKDI CHSLPQNYGL FPSEDDRDVI  240
IGVGSVGGDL FQDIDDRQFD SVLECRRGKG EFGKGKGKAN FATERERREQ LNVKFRTLRM  300
LFPNPTKNDR ASIVGDAIEY IDELNRTVKE LKILVEQKRH GNNRRKMLKL DQEAAADGES  360
SSMRPVRDDQ DNQLHGAIRS SWVQRRSKEC QVDVRIVDDE VNIKLTEKKK ANSLLHAAKV  420
LDEFQLELIH VVGGIIGDHH IFMFNTKVSE GSAVYACAVA KRLLQAVDVQ HQALDIFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195090.0AK119509.1 Oryza sativa Japonica Group cDNA clone:001-134-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634639.10.0transcription factor EAT1
RefseqXP_015634640.10.0transcription factor EAT1
RefseqXP_015634641.10.0transcription factor EAT1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A0D9W8Y30.0A0A0D9W8Y3_9ORYZ; Uncharacterized protein
STRINGLPERR04G19640.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.26e-54bHLH family protein