PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 261aa    MW: 29248.3 Da    PI: 9.5054
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.66.9e-34761155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWtpeLHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  LPERR04G19690.1  7 KPRLRWTPELHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 61
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.996464IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-33464IPR009057Homeodomain-like
SuperFamilySSF466893.76E-17663IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24762IPR006447Myb domain, plants
PfamPF002494.0E-10960IPR001005SANT/Myb domain
PfamPF143792.8E-21104149IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATREPKPRL RWTPELHERF VDAVTKLGGP DKATPKSVLR LMGMKGLTLY HLKSHLQKYR  60
LGRQNKKTAG LELADSGFTA EGTSFSTGAP RRDPAEGNNT GERQLADALR YQVEVQRKLH  120
EQLEVQKKLQ MRIEAQARYL EEILEKAQKN ISLDANGSAN LASNTPQITD INLALSGFMD  180
NATQLHEENN ELVKAISDDK LKVNLGFQLY HVGSQESKDV KCTPKTEDLL LLGLNIRGGY  240
ELPSRGMKGC ELDLKINQQT R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22763258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064001e-174AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635409.11e-159myb family transcription factor PHL11 isoform X2
TrEMBLA0A0D9W8Y90.0A0A0D9W8Y9_9ORYZ; Uncharacterized protein
STRINGLPERR04G19690.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.12e-61G2-like family protein