PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G22430.3

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 369aa MW: 41759.4 Da PI: 7.9267

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G22430.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.9e-11	78	116	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 ++k+ rr+++NReAAr+sR+RKka+i++Le+ +L + LPERR04G22430.3 78 PDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLKLAQL 116 789***************************854444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.6E-8	74	125	No hit	No description
SMART	SM00338	1.1E-10	76	140	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.933	78	122	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-8	78	118	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.34E-7	80	125	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-26	168	242	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MTLASTQFAA PVRMGAYDRP PPVGMWSHEQ FKVDNGQATS ASTIMESEMK YEARLEEVPQ 60 VVLDQEARNV DQEASKSPDK VLRRLAQNRE AARKSRLRKK AYIQQLETSR LKLAQLEQEL 120 QRARQQSVYA NGGLREPNLG FTGAIDPGAV NFEIEYSHWV DEQNRNTGEL RNALLQAQTT 180 EDELKLLVEI GLENYSRLFN IKKDAANSDV FYVMSGMWKT PTERFFLWIG GFRPSEVLKN 240 LRPQLEPLLE HQIVSVNGLQ HSSMQAEDAL SQGMDKLKQT IADSLTAADP FGSPDAYMVH 300 MANAVEQLKS LVKFVIQADH LRHTTLLEMR RILTTRQAAR GLVALGDYLQ RFRALSSLWT 360 ARPRDSGIS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MTLASTQFAA PVRMGAYDRP PPVGMWSHEQ FKVDNGQATS ASTIMESEMK YEARLEEVPQ  60
VVLDQEARNV DQEASKSPDK VLRRLAQNRE AARKSRLRKK AYIQQLETSR LKLAQLEQEL  120
QRARQQSVYA NGGLREPNLG FTGAIDPGAV NFEIEYSHWV DEQNRNTGEL RNALLQAQTT  180
EDELKLLVEI GLENYSRLFN IKKDAANSDV FYVMSGMWKT PTERFFLWIG GFRPSEVLKN  240
LRPQLEPLLE HQIVSVNGLQ HSSMQAEDAL SQGMDKLKQT IADSLTAADP FGSPDAYMVH  300
MANAVEQLKS LVKFVIQADH LRHTTLLEMR RILTTRQAAR GLVALGDYLQ RFRALSSLWT  360
ARPRDSGIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G22430.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880678.1	0.0	transcription factor TGAL6 isoform X3
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A0D9WA41	0.0	A0A0D9WA41_9ORYZ; Uncharacterized protein
STRING	LPERR04G22430.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-118	TGACG motif-binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]