PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G23130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 409aa    MW: 42743 Da    PI: 6.1853
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G23130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-14147197155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  LPERR04G23130.1 147 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 197
                      79********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.54843112IPR001471AP2/ERF domain
SMARTSM003801.6E-1269118IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-976113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-1177112IPR001471AP2/ERF domain
PfamPF008472.7E-10147197IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-18147207IPR016177DNA-binding domain
CDDcd000181.76E-25147207No hitNo description
Gene3DG3DSA:3.30.730.108.7E-17148205IPR001471AP2/ERF domain
PROSITE profilePS5103216.067148205IPR001471AP2/ERF domain
SMARTSM003808.5E-33148211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MWDLNDSPAP PPQPLSPSAD DSGASSSSAA AVDADDDSAA GAGAGGVVVV TRQFFPPAVP  60
GGDHPVSPGN ARSGDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSLEDYEDDL  120
KQMSNLTKEE FVHVLRRQST GFPRGSSKFR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT  180
EEEAARAYDR AAIKCNGKDA VTNFDPSIYA GEFEPAGAAA SANGDASGEH NLDLSLGSSA  240
GSKRGNLDGG DDEIAGGGGA GSDQRVPMAF DLDWQTAAAR STKAKFDQNS KHPQMPPVLQ  300
VSQLPFSPRH HQFMSNGDPG TAAGGLSLTI GAGVGGHWPH QQQHVGWGNA GGTSWPMPPH  360
PPPTLTPTPT NAAATATAAA ASSRFPPYIA TQASSWLQKN GFHSLTRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G23130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.11e-173AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_015691597.11e-174PREDICTED: floral homeotic protein APETALA 2-like
SwissprotB8AVJ91e-176APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0D9WAC90.0A0A0D9WAC9_9ORYZ; Uncharacterized protein
STRINGLPERR04G23130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-74AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]