PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G23150.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WOX
Protein Properties Length: 216aa    MW: 24283.5 Da    PI: 9.7937
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G23150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-2084143357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++++eq+++Le l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  LPERR04G23150.1  84 TRWNPSPEQIKVLEMLYRGgMRTPNSVQIERITEELgkygRIEGKNVFYWFQNHKARERQ 143
                      8*****************99**************************************97 PP
2Wus_type_Homeobox117.37.2e-3883145365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P+peQik+Le+ly+ G+rtPn+ +i+rit+eL +yG+ie+kNVfyWFQN+kaRerqkq
    LPERR04G23150.1  83 TTRWNPSPEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQ 145
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.97779144IPR001356Homeobox domain
SMARTSM003895.0E-781148IPR001356Homeobox domain
SuperFamilySSF466897.7E-1382149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-884143IPR009057Homeodomain-like
CDDcd000866.24E-584145No hitNo description
PfamPF000462.0E-1784143IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRLHHLHVAY LDKTSSSSSP ATSTSPSMIT GSTFPSFSFK CLRPLAPKIS FPDQPRKQAE  60
FVPRARNSSK LLNYTVQMPA TGTTRWNPSP EQIKVLEMLY RGGMRTPNSV QIERITEELG  120
KYGRIEGKNV FYWFQNHKAR ERQKQKRAAL LTLSTLDSSS LIPPAANDTK EGQKKEEEEV  180
DEGLASCKRR CKAWGDDDGT DDGTLELFPL HPQGKA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G23150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635367.11e-109WUSCHEL-related homeobox 4
SwissprotQ25AM21e-110WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-110WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A0D9WAD11e-161A0A0D9WAD1_9ORYZ; Uncharacterized protein
STRINGLPERR04G23150.11e-162(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.17e-35WUSCHEL related homeobox 4