PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G24260.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 305aa    MW: 31673.8 Da    PI: 9.8167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G24260.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-09105130227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C  +  t  Ck+Gd+C+FaHg+
  LPERR04G24260.2 105 KTRMCTKYNTTEGCKFGDKCHFAHGE 130
                      9***********************96 PP
2zf-CCCH35.22.1e-11272297127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + GtC +G+rC+FaHg+
  LPERR04G24260.2 272 FKTKLCENFVK-GTCTFGERCHFAHGE 297
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.233765IPR000571Zinc finger, CCCH-type
SMARTSM003565.23764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-63962IPR000571Zinc finger, CCCH-type
PfamPF146080.374562No hitNo description
PROSITE profilePS5010313.892103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.019103130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-13104133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-8104132IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.71E-14169244IPR004088K Homology domain, type 1
SMARTSM003228.9E-11173243IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.8E-15173243IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257174238IPR004088K Homology domain, type 1
CDDcd001055.01E-14176238No hitNo description
PfamPF000131.5E-10176238IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-13270301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8270301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.793271298IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7271297IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9272297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009534Cellular Componentchloroplast thylakoid
GO:0010287Cellular Componentplastoglobule
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEGAGSARKR SRPDMANGGG SGGKRSREME SFQTGLSSKL KPCTKFFSTV GCPFGEGCHF  60
SHFVPGGYQA VSKTLNLGNP AVPVPARAPM DHAAAGNSHP ASSGKTRMCT KYNTTEGCKF  120
GDKCHFAHGE RELCKPAYMS HESAMAPMGG RYGGRPEAPP PAAMGPPAGN FGASATAKIS  180
VDASLAGGII GKGGVNTKQI CRVTGVKLSI RDHESDPNLK NIELEGNFDQ IKQASNMVGE  240
LIATISASTP AKKPANAAAP AGRGGPGGRS NFKTKLCENF VKGTCTFGER CHFAHGETEQ  300
RKGAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G24260.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8338350.0CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692062.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-173C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A0D9WAV00.0A0A0D9WAV0_9ORYZ; Uncharacterized protein
STRINGOB04G35690.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]