PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G24260.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 281aa    MW: 28909.8 Da    PI: 10.4242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G24260.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-0981106227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C  +  t  Ck+Gd+C+FaHg+
  LPERR04G24260.4  81 KTRMCTKYNTTEGCKFGDKCHFAHGE 106
                      9***********************96 PP
2zf-CCCH35.41.9e-11248273127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + GtC +G+rC+FaHg+
  LPERR04G24260.4 248 FKTKLCENFVK-GTCTFGERCHFAHGE 273
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.01979106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.89279107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-1380109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-880108IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-581106IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.95E-14145220IPR004088K Homology domain, type 1
SMARTSM003228.9E-11149219IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.106.7E-15149219IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257150214IPR004088K Homology domain, type 1
PfamPF000131.3E-10152214IPR004088K Homology domain, type 1
CDDcd001059.06E-14152214No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-13246277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8246277IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7247273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.793247274IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9248273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009534Cellular Componentchloroplast thylakoid
GO:0010287Cellular Componentplastoglobule
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEGAGSARKR SRPDMANGGG SGGKRSRALS GALLVRAAIS RTLSLVVSKT LNLGNPAVPV  60
PARAPMDHAA AGNSHPASSG KTRMCTKYNT TEGCKFGDKC HFAHGERELC KPAYMSHESA  120
MAPMGGRYGG RPEAPPPAAM GPPAGNFGAS ATAKISVDAS LAGGIIGKGG VNTKQICRVT  180
GVKLSIRDHE SDPNLKNIEL EGNFDQIKQA SNMVGELIAT ISASTPAKKP ANAAAPAGRG  240
GPGGRSNFKT KLCENFVKGT CTFGERCHFA HGETEQRKGA A
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G24260.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8278340.0HQ827834.1 Oryza punctata isolate BB Shattering4 gene locus, complete sequence.
GenBankHQ8278350.0HQ827835.1 Oryza minuta isolate BC_B Shattering4 gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692062.11e-145PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-132C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A0D9WAV20.0A0A0D9WAV2_9ORYZ; Uncharacterized protein
STRINGOB04G35690.11e-144(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-52C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]