PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G24670.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 769aa    MW: 85606 Da    PI: 6.2645
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G24670.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.6e-171191833199
                      .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +  ++l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  LPERR04G24670.2 119 A--QELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 183
                      3..48999*********************************************..8899999****997 PP
2Auxin_resp112.73.4e-37208291183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  LPERR04G24670.2 208 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 291
                      79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.9E-8101184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-26111197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-26111211IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-14117183IPR003340B3 DNA binding domain
CDDcd100175.74E-12120182No hitNo description
PROSITE profilePS5086310.32121184IPR003340B3 DNA binding domain
PfamPF065071.4E-32208291IPR010525Auxin response factor
SuperFamilySSF542771.18E-7664745No hitNo description
PROSITE profilePS5174524.037670754IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MSSSSAASIG PPPPPPPAPP EEEKKCLNSE LWHACAGPLV CLPTVGTRVV YFPQGHSEQV  60
AASTNKEVEG HIPNYPNLPA QLICQLHDVT MHADVETDEV YAQMTLQPLN PDFTQQPPAQ  120
ELIARDIHDI EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI  180
RRASRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLSKYIK  240
AVFHTRISVG MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV KVGWDESTAG  300
ERPPRVSLWE IEPLTTFPMY PSLFPLRVKH PWYSGVASLH DDSNALMWLR GVAGEGGFQS  360
LNFQSPGIGS WGQQRLHPSL LSTDHDQYQA VVAAAAAASQ SGGYLKQQFL HLQQPMQSPQ  420
EHCNLNPLLQ QQILQQASQQ QMISPEAQNI QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI  480
QPDQTYQVPS SAVLPSPTSL PSHLREKFGF SDPNANSSSF ITSSSSDNML DSSFLQGSSK  540
SVDLSRFNQP VASEQQQQQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK DGSVENKIGR  600
DVQNQSLFSP QVDSSSLLYN MVPNLTSNIA DNNLSTIPSG STYLQNAMYG CLDDSSGLLQ  660
NTGENDPTTR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL  720
VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK QGNDPRYLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1272331247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G24670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712980.0AB071298.1 Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691612.10.0PREDICTED: auxin response factor 12, partial
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
TrEMBLA0A0D9WAZ90.0A0A0D9WAZ9_9ORYZ; Auxin response factor
STRINGLPERR04G24670.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]