PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G25240.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 227aa MW: 23596.1 Da PI: 7.174

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G25240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.1	1.4e-36	55	113	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k+++l+cprC stntkfCyynnys+sqPr+fC+aCrryWt+GG+lr+vPvGg++r+ + LPERR04G25240.1 55 KQQQLECPRCRSTNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPVGGATRRAAA 113 7899***************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.8E-33	57	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.885	59	113	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-23	59	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAPAVASSTL LSAAAAAAAS KKRPADSDAL PPIDSSPPPP QGDEEASTEK KQNQKQQQLE 60 CPRCRSTNTK FCYYNNYSTS QPRHFCRACR RYWTHGGTLR DVPVGGATRR AAAAKRRRVS 120 DDPSSSPSPP PPTSTTTTSD AYYADLPAAG AAGFPFLSDG AFLPQFGLAA AGVAAPAAFS 180 WQSVIADLYN CGIAPWDDGT AVAGAAACDG FTDIAGGLDL TWPPPGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	118	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G25240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448779.1	5e-70	dof zinc finger protein DOF5.8
TrEMBL	A0A0D9WB76	1e-161	A0A0D9WB76_9ORYZ; Uncharacterized protein
STRING	LPERR04G25240.1	1e-162	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	2e-27	Dof family protein