PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G26090.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 507aa    MW: 54441.5 Da    PI: 6.3737
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G26090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.39.5e-26121221299
                      EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       k+lt+sd+++ g +++p+++ae++       + ++ +   l ++d++g+ W++++iyr++++r++lt+GW++Fv+a+ L +gD+vvF+  +r 
  LPERR04G26090.1 121 AKQLTQSDANNGGGFSIPRSCAEKIfpalnltDDPPVQ--NLAMTDLQGQPWKFRHIYRGTPRRHLLTTGWSRFVNAKLLVAGDTVVFM--RRP 210
                      69****************************98777767..6************************************************..679 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++v+r+
  LPERR04G26090.1 211 DASLLIGVRRA 221
                      999*****996 PP
2Auxin_resp37.41.1e-13247317368
       Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalk..vkvsvGmRfkma.fetedsserrl..sGtvvgvsd 68 
                      + a+++ +F+v+Y+Pr+++ eFvv++++vek l+   ++ +G +++ + +ete+ ++r     Gtv  vs+
  LPERR04G26090.1 247 RLAAEGAPFTVTYYPRQGAGEFVVPRAEVEKGLTatDELRAGVQVRAQvVETEEDPRRVSwlNGTVKNVSH 317
                      678999*************************987557899******98358887776654499***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-28111226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-34116234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-19118220No hitNo description
SMARTSM010195.4E-15120222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858120222IPR003340B3 DNA binding domain
PfamPF023625.4E-22121221IPR003340B3 DNA binding domain
PfamPF065071.3E-9246317IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MARPPAPAAS SAPPPPVDPL VWLACAAPLS RIPVVGSQVY YFPEGHAEQC PAPLPEPLPP  60
THQVFLCAVA AVRLAADATT GEPFATISLV PAVNLAADAT VSLLLPAVHL PTQGDQFRYY  120
AKQLTQSDAN NGGGFSIPRS CAEKIFPALN LTDDPPVQNL AMTDLQGQPW KFRHIYRGTP  180
RRHLLTTGWS RFVNAKLLVA GDTVVFMRRP DASLLIGVRR AARYTAGVSP CNARARVPPQ  240
EVMDSARLAA EGAPFTVTYY PRQGAGEFVV PRAEVEKGLT ATDELRAGVQ VRAQVVETEE  300
DPRRVSWLNG TVKNVSHRIW RNLQVEWDPS SSSFPMENRY VNPWQIQPVG FPPLPMGLQI  360
QNSSTAPMPL PLELLPAGIQ GAWHHANAHA DIPSSSMLTT QPLFPRADLH ISVPPTFAAG  420
SSHSGSSNNS ENTPEGMKTI QLFGVTITSP VAPMQCDTDD TSAYASASAQ VNQVPQGMDY  480
ETASEGTSAT SPLDSLSNGQ NHDGARL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-591034744388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G26090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634416.10.0auxin response factor 13
SwissprotQ7XSS90.0ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A0D9WBJ00.0A0A0D9WBJ0_9ORYZ; Auxin response factor
STRINGLPERR04G26090.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.12e-72auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]