PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G00120.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 164aa    MW: 18244.4 Da    PI: 3.9603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G00120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.98.9e-1576572128
              NAM  72 krknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++nr+t+sg W+  g++k++++   ++  + +k+++vfy g+ p ++kt+Wvmhey l
  LPERR05G00120.1   7 AQSNRMTSSGSWNPIGTNKNIFDVgnHEVPIAVKRVFVFYLGHLPLTTKTSWVMHEYCL 65 
                      689*******************985555669**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.739194IPR003441NAC domain
SuperFamilySSF1019411.28E-17894IPR003441NAC domain
PfamPF023653.7E-7965IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPAAQVAQSN RMTSSGSWNP IGTNKNIFDV GNHEVPIAVK RVFVFYLGHL PLTTKTSWVM  60
HEYCLTNPPR VAVPSSSIDP IPSEEMVLCK ISNKDLPEPP ILHRDILQFP PSGLYDVAYS  120
PILDLEPLEM EYLDVDIGDI DDDVTTDDSS DLDEEDINQN TTTT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.14e-48NAC domain-containing protein 48-like
TrEMBLA0A0D9WBQ21e-116A0A0D9WBQ2_9ORYZ; Uncharacterized protein
STRINGLPERR05G00120.11e-117(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-14NAC domain containing protein 25