PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G00200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 254aa    MW: 27950.9 Da    PI: 7.2827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G00200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09172219455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  LPERR05G00200.1 172 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 219
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-11166223No hitNo description
SuperFamilySSF474596.02E-18166239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-18168241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6172219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MESFSGQHEH EQQLHQQSSS SLHPYCFLSA PDPLPPLPVQ AAIPVMVAYD SSSAISFDTN  60
SMSMEYSPMV MQLQESSPLS FEDAATGDKK WMPAGIQGSC TCSLGSSQDM DGSWGKSRKH  120
RRSNVGVRGL QEKKARRVVV HGHGDVKAKE AGGEPPAGYI HVRARRGQAT DSHSLAERVR  180
REKISERMKM LQSLVPGCDK VTGKALMLDE IISYVQSLQN QVEFLSMKLA SLSPMMYELG  240
PGIDMYPDIL PQVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658641e-174AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
GenBankHQ8588531e-174HQ858853.1 Oryza sativa Japonica Group isolate UT1616 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692858.11e-121PREDICTED: transcription factor bHLH77-like
SwissprotQ93W883e-51BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0D9WBR20.0A0A0D9WBR2_9ORYZ; Uncharacterized protein
STRINGLPERR05G00200.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP167931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]