PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G01000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 193aa    MW: 20132.9 Da    PI: 6.8544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G01000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000514567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+++F++   L  H  +H
  LPERR05G01000.1 45 FVCKTCNRVFPSFQALGGHRASH 67
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.27E-843109No hitNo description
PfamPF139121.0E-124469IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4944572IPR007087Zinc finger, C2H2
SMARTSM003550.114567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.2E-887111IPR007087Zinc finger, C2H2
SMARTSM003554.887109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKRFAFDDGE MARVLMLMST SPAAAQQRSP AVIAGGNAAP AERAFVCKTC NRVFPSFQAL  60
GGHRASHKKP RLDGDGDLSG DGKPKLHGCS ICGLEFAIGQ ALGGHMRRHR AITGGMPRAI  120
VVDKKPDVVG DVGDIKRGGL WLDLNYPPCD DVAAAGDVDD DGECGHINGG GAGITFHQFL  180
DVAGAMAVDC VGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G01000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939211e-101AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence.
GenBankAC1085041e-101AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence.
GenBankAK1089811e-101AK108981.1 Oryza sativa Japonica Group cDNA clone:002-153-F01, full insert sequence.
GenBankAP0149611e-101AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638278.18e-93zinc finger protein ZAT12
TrEMBLA0A0D9WC101e-137A0A0D9WC10_9ORYZ; Uncharacterized protein
STRINGLPERR05G01000.11e-138(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.18e-23C2H2 family protein