PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G01200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WOX
Protein Properties Length: 282aa    MW: 29833.7 Da    PI: 8.6032
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G01200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-202483357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  LPERR05G01200.1 24 TRWCPTPEQLMILEEMYRGgLRTPNASQIQQITAHLasygRIEGKNVFYWFQNHKARDRQ 83
                     8*****************99*************************************996 PP
2Wus_type_Homeobox119.41.5e-382284264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
    LPERR05G01200.1 22 STTRWCPTPEQLMILEEMYRGGLRTPNASQIQQITAHLASYGRIEGKNVFYWFQNHKARDRQK 84
                       579***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.7821984IPR001356Homeobox domain
SMARTSM003893.2E-42188IPR001356Homeobox domain
SuperFamilySSF466891.24E-102387IPR009057Homeodomain-like
PfamPF000465.9E-182483IPR001356Homeobox domain
CDDcd000863.80E-52484No hitNo description
Gene3DG3DSA:1.10.10.605.8E-72483IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAPAVQQQQQ SGGSSSAAAV GSTTRWCPTP EQLMILEEMY RGGLRTPNAS QIQQITAHLA  60
SYGRIEGKNV FYWFQNHKAR DRQKLRRRLC MSHHLLSCAH YYAAAHNHHH LHHLVSPTTA  120
AAGVGVSPPH LSAAPSLMPP PMQSSYEQLL SPNSAAANTA AGYAAAAGFY YPFAAAAAAP  180
PGRTSPATSS LFHYNQGGMI LPAAAAETNG RSSSEYSLGK LVDNFGVALG EAFPAPHPPP  240
PATTAVTFID TMPAPAAGGF CRPLKTLDLF PGGLKEEQHD VA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G01200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0789776e-72AC078977.6 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0496H07, complete sequence.
GenBankAM4902446e-72AM490244.1 Oryza sativa mRNA for putative wuschel homeobox protein (wox3 gene).
GenBankAP0149616e-72AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-72CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164197.19e-78putative WUSCHEL-related homeobox 2
TrEMBLA0A0D9WC420.0A0A0D9WC42_9ORYZ; Uncharacterized protein
STRINGLPERR05G01200.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-40WOX family protein