PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G01420.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 455aa    MW: 49170.5 Da    PI: 9.2466
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G01420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17115164155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  LPERR05G01420.1 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                      78*******************......55************************997 PP
2AP237.18.1e-12207270155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse......ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +        +g     +++++lg f+++ eAa+a+++a+ k +g
  LPERR05G01420.1 207 SKYRGVTLHK-CGRWEARMGQFLGkkefltGGnamlGCRYIYLGLFDSEVEAARAYDKAAIKCNG 270
                      89********.7******99844435777533688777**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16115173IPR016177DNA-binding domain
PfamPF008475.1E-9115164IPR001471AP2/ERF domain
PROSITE profilePS5103217.596116172IPR001471AP2/ERF domain
CDDcd000185.15E-11116174No hitNo description
SMARTSM003805.9E-32116178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17116173IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-13207279IPR016177DNA-binding domain
PfamPF008471.5E-7207270IPR001471AP2/ERF domain
CDDcd000186.95E-22207280No hitNo description
SMARTSM003804.4E-27208284IPR001471AP2/ERF domain
PROSITE profilePS5103214.961208278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12208278IPR001471AP2/ERF domain
PRINTSPR003674.6E-6209220IPR001471AP2/ERF domain
PRINTSPR003674.6E-6260280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MELDLNVADG VPEKQETTAR SDSGTSESSV LNAEASGGGG AATATAEEGS SSTPPPPPPP  60
PALGFLRPEP PRHQPPDIRI LAASPAPVPA APPPPPPPQP QAAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FNLSDYEDDM  180
KQMKSLSKEE FVHVLRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KEFLTGGNAM  240
LGCRYIYLGL FDSEVEAARA YDKAAIKCNG REAVTNFEPS TYDGELPTDA AAQGADVDLN  300
LSISQPASQQ SPKRDSSSLG LQIHHGSFDG SEFKRAKNDA PSELASRPHR FPLLTEHPPI  360
WTAQPHPLFQ NNEDASRPSS SDQKRKPEGG VVPSWAWKQV NHPPPHLPFF SSPSSSAAAS  420
SGFSKTATTA AAHTASLRFD PTAPSSSSSG RHHRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G01420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851170.0AY685117.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639330.11e-174AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ84TB51e-104AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0D9WC660.0A0A0D9WC66_9ORYZ; Uncharacterized protein
STRINGLPERR05G01420.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-93related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]